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treefit  

The First Software for Quantitative Trajectory Inference
View on CRAN: Click here


Download and install treefit package within the R console
Install from CRAN:
install.packages("treefit")

Install from Github:
library("remotes")
install_github("cran/treefit")

Install by package version:
library("remotes")
install_version("treefit", "1.0.3")



Attach the package and use:
library("treefit")
Maintained by
Kouhei Sutou
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-10
Latest Update: 2025-02-09
Description:
Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.
How to cite:
Kouhei Sutou (2020). treefit: The First Software for Quantitative Trajectory Inference. R package version 1.0.3, https://cran.r-project.org/web/packages/treefit. Accessed 26 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:15), 1.0.0 (2020-03-10 10:50), 1.0.1 (2021-03-22 10:30), 1.0.2 (2022-01-18 08:50)
Other packages that cited treefit R package
View treefit citation profile
Other R packages that treefit depends, imports, suggests or enhances
Complete documentation for treefit
Functions, R codes and Examples using the treefit R package
Some associated functions: generate_2d_n_arms_linked_star_data . generate_2d_n_arms_star_data . generate_n_arms_star_data . perturbate_knn . perturbate_poisson . plot.treefit . treefit . 
Some associated R codes: generate.R . treefit.R .  Full treefit package functions and examples
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