Other packages > Find by keyword >

SADEG  

Stability Analysis in Differentially Expressed Genes
View on CRAN: Click here


Download and install SADEG package within the R console
Install from CRAN:
install.packages("SADEG")

Install from Github:
library("remotes")
install_github("cran/SADEG")

Install by package version:
library("remotes")
install_version("SADEG", "1.0.0")



Attach the package and use:
library("SADEG")
Maintained by
Babak Khorsand
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-13
Latest Update: 2017-01-13
Description:
We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequences. Besides, in a variety of different organisms unequal use of synonymous codons, or codon usage bias, occurs which also show variation among genes in the same genome. Seemingly, codon usage bias is affected by both selective constraints and mutation bias which allows and enables us to examine and detect changes in these two evolutionary forces between genomes or along one genome. Therefore, we determined the codon adaptation index (CAI), effective number of codons (ENC) and codon usage analysis with calculation of the relative synonymous codon usage (RSCU), and subsequently predicted the translation efficiency and accuracy through GC-rich codon usages. Furthermore, we estimated the relative stability of the DNA sequence following calculation of the average free energy (Delta G) and Dimer base-stacking energy level.
How to cite:
Babak Khorsand (2017). SADEG: Stability Analysis in Differentially Expressed Genes. R package version 1.0.0, https://cran.r-project.org/web/packages/SADEG. Accessed 25 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited SADEG R package
View SADEG citation profile
Other R packages that SADEG depends, imports, suggests or enhances
Complete documentation for SADEG
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA