R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
SADEG
View on CRAN: Click
here
Download and install SADEG package within the R console
Install from CRAN:
install.packages("SADEG")
Install from Github:
library("remotes")
install_github("cran/SADEG") Install by package version:
library("remotes")
install_version("SADEG", "1.0.0") Attach the package and use:
library("SADEG")
Maintained by
Babak Khorsand
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-01-13
Latest Update: 2017-01-13
Description:
We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequences. Besides, in a variety of different organisms unequal use of synonymous codons, or codon usage bias, occurs which also show variation among genes in the same genome. Seemingly, codon usage bias is affected by both selective constraints and mutation bias which allows and enables us to examine and detect changes in these two evolutionary forces between genomes or along one genome. Therefore, we determined the codon adaptation index (CAI), effective number of codons (ENC) and codon usage analysis with calculation of the relative synonymous codon usage (RSCU), and subsequently predicted the translation efficiency and accuracy through GC-rich codon usages. Furthermore, we estimated the relative stability of the DNA sequence following calculation of the average free energy (Delta G) and Dimer base-stacking energy level.
How to cite:
Babak Khorsand (2017). SADEG: Stability Analysis in Differentially Expressed Genes. R package version 1.0.0, https://cran.r-project.org/web/packages/SADEG. Accessed 25 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited SADEG R package
View SADEG citation profile
Other R packages that SADEG depends,
imports, suggests or enhances
Complete documentation for SADEG
Functions, R codes and Examples using
the SADEG R package
Some associated functions: SADEG.ACGT . SADEG.CAI . SADEG.CodonUsage . SADEG.Dimer . SADEG.DimerStackingEnergy . SADEG.EENC . SADEG.GC . SADEG.GC1 . SADEG.GC12 . SADEG.GC2 . SADEG.GC3 . SADEG.RSCU . SADEG.ReverseComplement . SADEG.StackingEnergy .
Some associated R codes: ATCG.R . CAI.R . CodonUsage.R . Dimer.R . DimerStackingEnergy.R . ENC.R . GC.R . GC1.R . GC12.R . GC2.R . GC3.R . RSCU.R . ReverseComplement.R . StackingEnergy.R . Full SADEG package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
airGRiwrm
Semi-distributed Precipitation-Runoff Modelling based on
'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: David Dorchies (view profile)
foster
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Martin Queinnec (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
sitmo
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: James Balamuta (view profile)
edeaR
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Gert Janssenswillen (view profile)
27,535
R Packages
236,180
Dependencies
73,223
Author Associations
27,536
Publication Badges
