Other packages > Find by keyword >

treedater  

Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
View on CRAN: Click here


Download and install treedater package within the R console
Install from CRAN:
install.packages("treedater")

Install from Github:
library("remotes")
install_github("cran/treedater")

Install by package version:
library("remotes")
install_version("treedater", "2.0.0")



Attach the package and use:
library("treedater")
Maintained by
Erik Volz
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-05-04
Latest Update:
Description:
Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.
How to cite:
Erik Volz (2018). treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation. R package version 2.0.0, https://cran.r-project.org/web/packages/treedater. Accessed 26 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:15), 0.2.0 (2018-05-04 12:42), 0.3.0 (2019-01-16 20:50), 0.5.0 (2020-01-26 19:40), 1.0.2 (2025-09-03 12:50)
Other packages that cited treedater R package
View treedater citation profile
Other R packages that treedater depends, imports, suggests or enhances
Complete documentation for treedater
Functions, R codes and Examples using the treedater R package
Some associated functions: boot . dater . goodnessOfFitPlot . outlierLineages . outlierTips . parboot . plot.bootTreedater . relaxedClockTest . rootToTipRegressionPlot . sampleYearsFromLabels . treedater-package . 
Some associated R codes: boot.R . multiRtT.R . outliers0.R . treedater.R . treedater0.R .  Full treedater package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

rts2  
Log-Gaussian Cox Process Models with Approximations
Supports modelling real-time case data to facilitate the real-time surveillance of infectious disea ...
Download / Learn more Package Citations See dependency  
MARSS  
Multivariate Autoregressive State-Space Modeling
The MARSS package provides maximum-likelihood parameter estimation for constrained and unconstraine ...
Download / Learn more Package Citations See dependency  
LSDsensitivity  
Sensitivity Analysis Tools for 'LSD' Simulations
Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
SADEG  
Stability Analysis in Differentially Expressed Genes
We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequence ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA