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treedater  

Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
View on CRAN: Click here


Download and install treedater package within the R console
Install from CRAN:
install.packages("treedater")

Install from Github:
library("remotes")
install_github("cran/treedater")

Install by package version:
library("remotes")
install_version("treedater", "0.5.0")



Attach the package and use:
library("treedater")
Maintained by
Erik Volz
[Scholar Profile | Author Map]
First Published: 2018-05-04
Latest Update: 2020-01-26
Description:
Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.
How to cite:
Erik Volz (2018). treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation. R package version 0.5.0, https://cran.r-project.org/web/packages/treedater. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.2.0 (2018-05-04 12:42), 0.3.0 (2019-01-16 20:50)
Other packages that cited treedater R package
View treedater citation profile
Other R packages that treedater depends, imports, suggests or enhances
Complete documentation for treedater
Functions, R codes and Examples using the treedater R package
Some associated functions: boot . dater . goodnessOfFitPlot . outlierLineages . outlierTips . parboot . plot.bootTreedater . relaxedClockTest . rootToTipRegressionPlot . sampleYearsFromLabels . treedater-package . 
Some associated R codes: boot.R . multiRtT.R . outliers0.R . treedater.R . treedater0.R .  Full treedater package functions and examples
Downloads during the last 30 days
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