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tcpl  

ToxCast Data Analysis Pipeline
View on CRAN: Click here


Download and install tcpl package within the R console
Install from CRAN:
install.packages("tcpl")

Install from Github:
library("remotes")
install_github("cran/tcpl")

Install by package version:
library("remotes")
install_version("tcpl", "3.3.1")



Attach the package and use:
library("tcpl")
Maintained by
Jason Brown
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-05-07
Latest Update: 2025-05-05
Description:
A set of tools for processing and modeling high-throughput and high-content chemical screening data. The package was developed for the the chemical screening data generated by the US EPA ToxCast program, but can be used for diverse chemical screening efforts.
How to cite:
Jason Brown (2016). tcpl: ToxCast Data Analysis Pipeline. R package version 3.3.1, https://cran.r-project.org/web/packages/tcpl. Accessed 05 Jun. 2026.
Previous versions and publish date:
1.2.2 (2018-05-10 16:25), 1.2 (2016-05-07 02:07), 1.4.3 (2018-05-20 16:38), 2.0.0 (2018-11-10 17:20), 2.0.1 (2018-11-16 17:20), 2.0.2 (2019-07-26 16:50), 2.1.0 (2022-03-03 20:10), 3.0.0 (2022-08-31 10:40), 3.0.1 (2022-11-08 15:30), 3.1.0 (2023-10-06 21:50), 3.2.0 (2024-10-09 20:10), 3.2.1 (2025-04-09 09:30), 3.3.0 (2025-05-05 16:00)
Other packages that cited tcpl R package
View tcpl citation profile
Other R packages that tcpl depends, imports, suggests or enhances
Complete documentation for tcpl
Functions, R codes and Examples using the tcpl R package
Some associated functions: MC2_Methods . MC3_Methods . MC4_Methods . MC5_Methods . MC6_Methods . Models . SC1_Methods . SC2_Methods . assay_funcs . blineShift . chdat . check_tcpl_db_schema . config_funcs . dot-buildAssayQ . dot-convertNames . dot-load6DR . dot-plateHeat . dot-prepField . flareFunc . hill_utils . interlaceFunc . invitrodb_dd . is.odd . lu . lw . mc1 . mc2 . mc3 . mc4 . mc5 . mc6 . mc_vignette . mcdat . mthd_funcs . query_funcs . registerMthd . rgstr_funcs . sc1 . sc2 . sc_vignette . scdat . sink.reset . tcplAICProb . tcplAddModel . tcplAppend . tcplCascade . tcplCode2CASN . tcplCytoPt . tcplDefine . tcplDelete . tcplFit . tcplFit2 . tcplFit2_nest . tcplFit2_unnest . tcplGetAeid . tcplHit2 . tcplListFlds . tcplLoadChem . tcplLoadClib . tcplLoadConcUnit . tcplLoadData . tcplLoadUnit . tcplLvlCount . tcplMakeAeidMultiPlts . tcplMakeAeidPlts . tcplMakeChidMultiPlts . tcplMultiplot . tcplPlot . tcplPlotFitc . tcplPlotFits . tcplPlotM4ID . tcplPlotPlate . tcplPlotlyPlot . tcplPrepOtpt . tcplRun . tcplSubsetChid . tcplVarMat . tcplWriteData . tcplWriteLvl0 . tcpldbStats . tcplggplot . write_lvl_4 . 
Some associated R codes: Models.R . assay_funcs.R . attachFormals.R . blineShift.R . buildAssayQ.R . chemQueries.R . clearSQLite.R . config_funcs.R . convertNames.R . data.R . drawCircles.R . flareFunc.R . getConfFile.R . hill_utils.R . interlaceFunc.R . is.odd.R . load6DR.R . lu.R . lw.R . mc1.R . mc2.R . mc2_mthds.R . mc3.R . mc3_mthds.R . mc4.R . mc4_mthds.R . mc5.R . mc5_mthds.R . mc6.R . mc6_mthds.R . mthd_funcs.R . multProc.R . multiplotFit.R . onAttach.R . onLoad.R . plateHeat.R . plotCompareFit.R . plotFit.R . prepField.R . query_funcs.R . registerMthd.R . rgstr_funcs.R . sc1.R . sc1_mthds.R . sc2.R . sc2_mthds.R . sink.reset.R . tcplAICProb.R . tcplAddModel.R . tcplAppend.R . tcplCascade.R . tcplCode2CASN.R . tcplConf.R . tcplConfDefault.R . tcplConfExample.R . tcplConfList.R . tcplConfLoad.R . tcplConfReset.R . tcplConfSave.R . tcplCytoPt.R . tcplDefine.R . tcplDelete.R . tcplFit.R . tcplFit2.R . tcplGetAeid.R . tcplHillACXX.R . tcplHillConc.R . tcplHillVal.R . tcplListFlds.R . tcplLiteInit.R . tcplLoadAcid.R . tcplLoadAeid.R . tcplLoadAid.R . tcplLoadAsid.R . tcplLoadChem.R . tcplLoadClib.R . tcplLoadConcUnit.R . tcplLoadData.R . tcplLoadUnit.R . tcplLvlCount.R . tcplMakeAeidMultiPlts.R . tcplMakeAeidPlts.R . tcplMakeChidMultiPlts.R . tcplMthdAssign.R . tcplMthdClear.R . tcplMthdList.R . tcplMthdLoad.R . tcplMultiplot.R . tcplObjCnst.R . tcplObjGnls.R . tcplObjHill.R . tcplPlot.R . tcplPlotFitc.R . tcplPlotFits.R . tcplPlotM4ID.R . tcplPlotPlate.R . tcplPrepOtpt.R . tcplQuery.R . tcplRegister.R . tcplRun.R . tcplSendQuery.R . tcplSubsetChid.R . tcplUpdate.R . tcplVarMat.R . tcplWriteData.R . tcplWriteLvl0.R . tcpldbStats.R . v3_schema_functions.R .  Full tcpl package functions and examples
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