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smartsnp  

Fast Multivariate Analyses of Big Genomic Data
View on CRAN: Click here


Download and install smartsnp package within the R console
Install from CRAN:
install.packages("smartsnp")

Install from Github:
library("remotes")
install_github("cran/smartsnp")

Install by package version:
library("remotes")
install_version("smartsnp", "1.1.0")



Attach the package and use:
library("smartsnp")
Maintained by
Christian Huber
[Scholar Profile | Author Map]
First Published: 2021-03-04
Latest Update: 2021-03-04
Description:
Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).
How to cite:
Christian Huber (2021). smartsnp: Fast Multivariate Analyses of Big Genomic Data. R package version 1.1.0, https://cran.r-project.org/web/packages/smartsnp. Accessed 11 Apr. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited smartsnp R package
View smartsnp citation profile
Other R packages that smartsnp depends, imports, suggests or enhances
Complete documentation for smartsnp
Functions, R codes and Examples using the smartsnp R package
Some associated functions: read_packedancestrymap . smart_mva . smart_pca . smart_permanova . smart_permdisp . 
Some associated R codes: RcppExports.R . read_packedancestrymap.R . smart_mva.R . smart_pca.R . smart_permanova.R . smart_permdisp.R . smartsnp-package.R .  Full smartsnp package functions and examples
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