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seqCBS  

Copy Number Profiling using Sequencing and CBS
View on CRAN: Click here


Download and install seqCBS package within the R console
Install from CRAN:
install.packages("seqCBS")

Install from Github:
library("remotes")
install_github("cran/seqCBS")

Install by package version:
library("remotes")
install_version("seqCBS", "1.2.1")



Attach the package and use:
library("seqCBS")
Maintained by
Jeremy J. Shen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2010-10-25
Latest Update: 2019-04-13
Description:
This is a method for DNA Copy Number Profiling using Next-Generation Sequencing. It has new model and test statistics based on non-homogeneous Poisson Processes with change point models. It uses an adaptation of Circular Binary Segmentation. Also included are methods for point-wise Bayesian Confidence Interval and model selection method for the change-point model. A case and a control sample reads (normal and tumor) are required.
How to cite:
Jeremy J. Shen (2010). seqCBS: Copy Number Profiling using Sequencing and CBS. R package version 1.2.1, https://cran.r-project.org/web/packages/seqCBS. Accessed 07 Nov. 2024.
Previous versions and publish date:
1.1 (2010-10-25 09:01), 1.2.1 (2019-04-13 07:22), 1.2 (2012-10-29 08:59)
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