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scalpel  

Processes Calcium Imaging Data
View on CRAN: Click here


Download and install scalpel package within the R console
Install from CRAN:
install.packages("scalpel")

Install from Github:
library("remotes")
install_github("cran/scalpel")

Install by package version:
library("remotes")
install_version("scalpel", "1.0.3")



Attach the package and use:
library("scalpel")
Maintained by
Ashley Petersen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-03-14
Latest Update:
Description:
Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, Ashley; Simon, Noah; Witten, Daniela. SCALPEL: Extracting neurons from calcium imaging data. Ann. Appl. Stat. 12 (2018), no. 4, 2430--2456. . .
How to cite:
Ashley Petersen (2017). scalpel: Processes Calcium Imaging Data. R package version 1.0.3, https://cran.r-project.org/web/packages/scalpel. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:01), 1.0.0 (2017-03-14 06:58), 1.0.1 (2018-09-28 20:00), 1.0.2 (2020-02-13 12:30), 1.0.3 (2021-02-03 06:30)
Other packages that cited scalpel R package
View scalpel citation profile
Other R packages that scalpel depends, imports, suggests or enhances
Complete documentation for scalpel
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