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rvHPDT  

Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees
View on CRAN: Click here


Download and install rvHPDT package within the R console
Install from CRAN:
install.packages("rvHPDT")

Install from Github:
library("remotes")
install_github("cran/rvHPDT")

Install by package version:
library("remotes")
install_version("rvHPDT", "4.0")



Attach the package and use:
library("rvHPDT")
Maintained by
Wei Guo
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-07-04
Latest Update: 2022-05-12
Description:
To detecting rare variants for binary traits using general pedigrees, the pedigree disequilibrium tests are proposed by collapsing rare haplotypes/variants with/without weights. To run the test, MERLIN is needed in Linux for haplotyping.
How to cite:
Wei Guo (2013). rvHPDT: Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees. R package version 4.0, https://cran.r-project.org/web/packages/rvHPDT
Previous versions and publish date:
1.0 (2013-07-04 07:44), 2.0 (2014-03-18 15:19), 3.0 (2014-05-14 17:15)
Other packages that cited rvHPDT R package
View rvHPDT citation profile
Other R packages that rvHPDT depends, imports, suggests or enhances
Functions, R codes and Examples using the rvHPDT R package
Some associated functions: HapMendlianCheck . convert.factors.to.strings.in.dataframe . fullPedigree . mydaoshu . mypaste . randomPDT . rchild . rhapPDT . rvPDT.test . rvPDT.test.permu . rvPDT.test.sub . whap.prehap . 
Some associated R codes: hPDT_functions.R .  Full rvHPDT package functions and examples
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