Other packages > Find by keyword >

roben  

Robust Bayesian Variable Selection for Gene-Environment Interactions
View on CRAN: Click here


Download and install roben package within the R console
Install from CRAN:
install.packages("roben")

Install from Github:
library("remotes")
install_github("cran/roben")

Install by package version:
library("remotes")
install_version("roben", "0.1.1")



Attach the package and use:
library("roben")
Maintained by
Jie Ren
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-11
Latest Update: 2020-05-11
Description:
Gene-environment (G×E) interactions have important implications to elucidate the etiology of complex diseases beyond the main genetic and environmental effects. Outliers and data contamination in disease phenotypes of G×E studies have been commonly encountered, leading to the development of a broad spectrum of robust penalization methods. Nevertheless, within the Bayesian framework, the issue has not been taken care of in existing studies. We develop a robust Bayesian variable selection method for G×E interaction studies. The proposed Bayesian method can effectively accommodate heavy-tailed errors and outliers in the response variable while conducting variable selection by accounting for structural sparsity. In particular, the spike-and-slab priors have been imposed on both individual and group levels to identify important main and interaction effects. An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in C++.
How to cite:
Jie Ren (2020). roben: Robust Bayesian Variable Selection for Gene-Environment Interactions. R package version 0.1.1, https://cran.r-project.org/web/packages/roben
Previous versions and publish date:
0.1.0 (2020-05-11 14:30)
Other packages that cited roben R package
View roben citation profile
Other R packages that roben depends, imports, suggests or enhances
Functions, R codes and Examples using the roben R package
Some associated functions: GxESelection . data . predict.roben . print.GxESelection . print.roben . print.roben.pred . roben-package . roben . 
Some associated R codes: DataMatrix.R . GxESelection.R . NonRobust.R . RcppExports.R . Robust.R . Utilities.R . data.R . predict.robin.R . print.robin.R . roben-package.R . roben.R .  Full roben package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

bulletr  
Algorithms for Matching Bullet Lands
Analyze bullet lands using nonparametric methods. We provide a reading routine for x3p files (see &l ...
Download / Learn more Package Citations See dependency  
buildr  
Organize & Run Build Scripts Comfortably
Working with reproducible reports or any other similar projects often require to run the script that ...
Download / Learn more Package Citations See dependency  
lgarch  
Simulation and Estimation of Log-GARCH Models
Simulation and estimation of univariate and multivariate log-GARCH models. The main functions of the ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
Deriv  
Symbolic Differentiation
R-based solution for symbolic differentiation. It admits user-defined function as well as function s ...
Download / Learn more Package Citations See dependency  

22,086

R Packages

187,731

Dependencies

55,244

Author Associations

22,087

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns