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rescue  

Bootstrap Imputation for Single-Cell RNA-Seq Data
View on CRAN: Click here


Download and install rescue package within the R console
Install from CRAN:
install.packages("rescue")

Install from Github:
library("remotes")
install_github("cran/rescue")

Install by package version:
library("remotes")
install_version("rescue", "1.0.3")



Attach the package and use:
library("rescue")
Maintained by
Sam Tracy
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-18
Latest Update: 2023-06-20
Description:
Given a log-transformed expression matrix and list of informative genes: subsample informative genes, cluster samples using shared nearest neighbors clustering, estimate missing expression values with the distribution mean of means extrapolated from these cell clusterings, and return an imputed expression matrix. See Tracy, S., Yuan, G.C. and Dries, R. (2019) for more details.
How to cite:
Sam Tracy (2020). rescue: Bootstrap Imputation for Single-Cell RNA-Seq Data. R package version 1.0.3, https://cran.r-project.org/web/packages/rescue. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0.3 (2020-07-18 12:00)
Other packages that cited rescue R package
View rescue citation profile
Other R packages that rescue depends, imports, suggests or enhances
Functions, R codes and Examples using the rescue R package
Some associated functions: bootstrapImputation . clusterLouvain . computeHVG . constructNN . sampleImputation . 
Some associated R codes: clustering.R . globals.R . imputation.R . variable_genes.R .  Full rescue package functions and examples
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