Other packages > Find by keyword >

rescue  

Bootstrap Imputation for Single-Cell RNA-Seq Data
View on CRAN: Click here


Download and install rescue package within the R console
Install from CRAN:
install.packages("rescue")

Install from Github:
library("remotes")
install_github("cran/rescue")

Install by package version:
library("remotes")
install_version("rescue", "1.0.3")



Attach the package and use:
library("rescue")
Maintained by
Sam Tracy
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-18
Latest Update: 2023-06-20
Description:
Given a log-transformed expression matrix and list of informative genes: subsample informative genes, cluster samples using shared nearest neighbors clustering, estimate missing expression values with the distribution mean of means extrapolated from these cell clusterings, and return an imputed expression matrix. See Tracy, S., Yuan, G.C. and Dries, R. (2019) for more details.
How to cite:
Sam Tracy (2020). rescue: Bootstrap Imputation for Single-Cell RNA-Seq Data. R package version 1.0.3, https://cran.r-project.org/web/packages/rescue. Accessed 26 Mar. 2025.
Previous versions and publish date:
1.0.3 (2020-07-18 12:00)
Other packages that cited rescue R package
View rescue citation profile
Other R packages that rescue depends, imports, suggests or enhances
Functions, R codes and Examples using the rescue R package
Some associated functions: bootstrapImputation . clusterLouvain . computeHVG . constructNN . sampleImputation . 
Some associated R codes: clustering.R . globals.R . imputation.R . variable_genes.R .  Full rescue package functions and examples
Downloads during the last 30 days
02/2402/2703/0403/0503/0603/1103/1303/1503/2003/2203/24Downloads for rescue0.811.21.41.61.822.22.42.62.833.2TrendBars

Today's Hot Picks in Authors and Packages

fPortfolio  
Rmetrics - Portfolio Selection and Optimization
A collection of functions to optimize portfolios and to analyze them from different points of view. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
photobiologyPlants  
Plant Photobiology Related Functions and Data
Provides functions for quantifying visible (VIS) and ultraviolet (UV) radiation in relation to the ...
Download / Learn more Package Citations See dependency  
sAIC  
Akaike Information Criterion for Sparse Estimation
Computes the Akaike information criterion for the generalized linear models (logistic regression, Po ...
Download / Learn more Package Citations See dependency  
provenance  
Statistical Toolbox for Sedimentary Provenance Analysis
Bundles a number of established statistical methods to facilitate the visual interpretation of large ...
Download / Learn more Package Citations See dependency  
DySS  
Dynamic Screening Systems
In practice, we will encounter problems where the longitudinal performance of processes needs to be ...
Download / Learn more Package Citations See dependency  
Maintainer: Lu You (view profile)

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA