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rbiom
View on CRAN: Click
here
Download and install rbiom package within the R console
Install from CRAN:
install.packages("rbiom")
Install from Github:
library("remotes")
install_github("cran/rbiom")
Install by package version:
library("remotes")
install_version("rbiom", "1.0.3")
Attach the package and use:
library("rbiom")
Maintained by
Daniel P. Smith
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-26
Latest Update: 2021-11-05
Description:
A toolkit for working with Biological Observation Matrix ('BIOM') files.
Features include reading/writing all 'BIOM' formats, rarefaction, alpha
diversity, beta diversity (including 'UniFrac'), summarizing counts by
taxonomic level, and sample subsetting. Standalone functions for
reading, writing, and subsetting phylogenetic trees are also provided.
All CPU intensive operations are encoded in C with multi-thread support.
How to cite:
Daniel P. Smith (2020). rbiom: Read/Write, Transform, and Summarize 'BIOM' Data. R package version 1.0.3, https://cran.r-project.org/web/packages/rbiom. Accessed 21 Dec. 2024.
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Other R packages that rbiom depends,
imports, suggests or enhances
Complete documentation for rbiom
Functions, R codes and Examples using
the rbiom R package
Some associated functions: alpha.div . beta.div . counts . info . metadata . nsamples . ntaxa . phylogeny . pipe . print . rarefy . rbiom . read.biom . read.fasta . read.tree . sample.names . select . sequences . subset . subtree . taxa.names . taxa.ranks . taxa.rollup . taxonomy . tips . unifrac . write.biom . write.fasta . write.tree . write.xlsx .
Some associated R codes: RcppExports.R . Full rbiom package functions and examples
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