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rbiom  

Read/Write, Analyze, and Visualize 'BIOM' Data
View on CRAN: Click here


Download and install rbiom package within the R console
Install from CRAN:
install.packages("rbiom")

Install from Github:
library("remotes")
install_github("cran/rbiom")

Install by package version:
library("remotes")
install_version("rbiom", "2.0.13")



Attach the package and use:
library("rbiom")
Maintained by
Daniel P. Smith
[Scholar Profile | Author Map]
First Published: 2020-05-26
Latest Update: 2021-11-05
Description:
A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.
How to cite:
Daniel P. Smith (2020). rbiom: Read/Write, Analyze, and Visualize 'BIOM' Data. R package version 2.0.13, https://cran.r-project.org/web/packages/rbiom. Accessed 27 Mar. 2025.
Previous versions and publish date:
1.0.0 (2020-05-26 16:20), 1.0.2 (2020-05-29 14:30), 1.0.3 (2021-11-05 06:50), 2.0.7 (2025-01-11 16:10), 2.0.10 (2025-01-19 23:10), 2.0.13 (2025-01-24 11:00), 2.1.1 (2025-03-10 19:50)
Other packages that cited rbiom R package
View rbiom citation profile
Other R packages that rbiom depends, imports, suggests or enhances
Complete documentation for rbiom
Functions, R codes and Examples using the rbiom R package
Some associated functions: alpha.div . beta.div . counts . info . metadata . nsamples . ntaxa . phylogeny . pipe . print . rarefy . rbiom . read.biom . read.fasta . read.tree . sample.names . select . sequences . subset . subtree . taxa.names . taxa.ranks . taxa.rollup . taxonomy . tips . unifrac . write.biom . write.fasta . write.tree . write.xlsx . 
Some associated R codes: RcppExports.R .  Full rbiom package functions and examples
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