R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
ratematrix
View on CRAN: Click
here
Download and install ratematrix package within the R console
Install from CRAN:
install.packages("ratematrix")
Install from Github:
library("remotes")
install_github("cran/ratematrix")
Install by package version:
library("remotes")
install_version("ratematrix", "1.2.4")
Attach the package and use:
library("ratematrix")
Maintained by
Daniel Caetano
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.ratematrix . https://github.com/Caetanods/ratematrix . ratematrix results . ratematrix.pdf . Introdution to ratematrix . ratematrix_1.2.4.tar.gz . ratematrix_1.2.4.zip . ratematrix_1.2.4.zip . ratematrix_1.2.4.zip . ratematrix_1.2.4.tgz . ratematrix_1.2.4.tgz . ratematrix_1.2.4.tgz . ratematrix_1.2.4.tgz . ratematrix_1.2.4.tgz . ratematrix_1.2.4.tgz . ratematrix archive . https://CRAN.R-project.org/package=ratematrix .
First Published: 2018-06-10
Latest Update: 2022-06-03
Description:
The Evolutionary Rate Matrix is a variance-covariance matrix which describes both the rates of trait evolution and the evolutionary correlation among multiple traits. This package has functions to estimate these parameters using Bayesian MCMC. It is possible to test if the pattern of evolutionary correlations among traits has changed between predictive regimes painted along the branches of the phylogenetic tree. Regimes can be created a priori or estimated as part of the MCMC under a joint estimation approach. The package has functions to run MCMC chains, plot results, evaluate convergence, and summarize posterior distributions.
How to cite:
Daniel Caetano (2018). ratematrix: Bayesian Estimation of the Evolutionary Rate Matrix. R package version 1.2.4, https://cran.r-project.org/web/packages/ratematrix. Accessed 26 Mar. 2025.
Previous versions and publish date:
Other packages that cited ratematrix R package
View ratematrix citation profile
Other R packages that ratematrix depends,
imports, suggests or enhances
Complete documentation for ratematrix
Functions, R codes and Examples using
the ratematrix R package
Some associated functions: anoles . centrarchidae . checkConvergence . computeESS . continueMCMC . estimateTimeMCMC . extractCorrelation . fastSimmap . getStartPointFromPosterior . likelihoodFunction . logAnalyzer . makePrior . mergePosterior . mergeSimmap . plotPrior . plotRatematrix . plotRootValue . print.ratematrix_multi_chain . print.ratematrix_multi_mcmc . print.ratematrix_prior_function . print.ratematrix_prior_sample . print.ratematrix_single_chain . print.ratematrix_single_mcmc . ratematrix . ratematrixJointMCMC . ratematrixMCMC . readMCMC . readMCMC_Mk . samplePrior . simRatematrix . testRatematrix .
Some associated R codes: RcppExports.R . calcNodeToNode.R . calcNodeToTip.R . calcNodeToTipNode.R . checkConvergence.R . checkHPD.R . checkHeidelTest.R . check_phy_list.R . computeESS.R . continueMCMC.R . dataset_anoles.R . dataset_centrarchidae.R . estimateTimeMCMC.R . extractCorrelation.R . fastSimmap.R . getEllipseMatrix.R . getStartPointFromPosterior.R . hastingsDensity.R . likelihoodFunction.R . logAnalyzer.R . logDensityIWish.R . logDensityMvNorm.R . logLikNode.R . logLikPrunningMCMC.R . logLikSingleRegime.R . makeDataTips.R . makePrior.R . makePriorIWish.R . makePropIWish.R . makePropMean.R . makePropMeanForMult.R . makePropMeanForMultList.R . makePropMeanList.R . makePropMultSigma.R . makePropMultSigmaList.R . makePropSingleSigma.R . makePropSingleSigmaList.R . mergePosterior.R . mergeSimmap.R . multRegimeJointMCMC.R . multRegimeMCMC.R . multiplierProposal.R . mvLogLik.R . plotPrior.R . plotRatematrix.R . plotRootValue.R . print.ratematrix_multi_chain.R . print.ratematrix_multi_mcmc.R . print.ratematrix_prior_function.R . print.ratematrix_prior_sample.R . print.ratematrix_single_chain.R . print.ratematrix_single_mcmc.R . priorDensityVcvBarnard.R . ratematrix-package.R . ratematrixJointMCMC.R . ratematrixMCMC.R . readMCMC.R . readMultRegimeMCMC.R . readSingleRegimeMCMC.R . riwish.R . samplePrior.R . samplePriorSeparationLimits.R . sampleTreeClade.R . simRatematrix.R . singleRegimeMCMC.R . slideWindow.R . slideWindowPositive.R . testRatematrix.R . writeToFile.R . writeToMultFile.R . Full ratematrix package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
provenance
Bundles a number of established statistical methods to facilitate the visual interpretation of large ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pieter Vermeesch (view profile)
MGL
An aggressive dimensionality reduction and network estimationtechnique for a high-dimensiona ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Safiye Celik (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
DySS
In practice, we will encounter problems where the longitudinal performance of processes needs to be ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Lu You (view profile)
photobiologyPlants
Provides functions for quantifying visible (VIS) and ultraviolet
(UV) radiation in relation to the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pedro J. Aphalo (view profile)
fPortfolio
A collection of functions to optimize portfolios and to analyze them from different points of view. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Stefan Theussl (view profile)
23,842
R Packages
207,311
Dependencies
64,420
Author Associations
23,781
Publication Badges
