Other packages > Find by keyword >

popEpi  

Functions for Epidemiological Analysis using Population Data
View on CRAN: Click here


Download and install popEpi package within the R console
Install from CRAN:
install.packages("popEpi")

Install from Github:
library("remotes")
install_github("cran/popEpi")

Install by package version:
library("remotes")
install_version("popEpi", "0.5.0")



Attach the package and use:
library("popEpi")
Maintained by
Joonas Miettinen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-09-29
Latest Update: 2025-01-31
Description:
Enables computation of epidemiological statistics, including those where counts or mortality rates of the reference population are used. Currently supported: excess hazard models (Dickman, Sloggett, Hills, and Hakulinen (2012) ), rates, mean survival times, relative/net survival (in particular the Ederer II (Ederer and Heise (1959)) and Pohar Perme (Pohar Perme, Stare, and Esteve (2012) ) estimators), and standardized incidence and mortality ratios, all of which can be easily adjusted for by covariates such as age. Fast splitting and aggregation of 'Lexis' objects (from package 'Epi') and other computations achieved using 'data.table'.
How to cite:
Joonas Miettinen (2015). popEpi: Functions for Epidemiological Analysis using Population Data. R package version 0.5.0, https://cran.r-project.org/web/packages/popEpi. Accessed 26 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:43), 0.2.1 (2015-09-29 17:33), 0.3.0 (2016-03-31 19:35), 0.3.1 (2016-04-25 16:52), 0.4.0 (2016-09-23 22:40), 0.4.1 (2016-11-08 18:36), 0.4.2 (2017-08-10 16:21), 0.4.3 (2017-09-05 19:39), 0.4.4 (2017-11-14 15:11), 0.4.5 (2018-05-16 18:34), 0.4.6 (2019-02-14 11:00), 0.4.7 (2019-03-18 17:50), 0.4.8 (2019-09-28 17:20), 0.4.9 (2021-10-29 10:20), 0.4.10 (2022-09-25 18:40), 0.4.11 (2023-08-23 16:30), 0.4.12 (2024-05-10 11:00), 0.4.13 (2025-01-31 12:00), 0.4.14 (2026-02-12 15:00)
Other packages that cited popEpi R package
View popEpi citation profile
Other R packages that popEpi depends, imports, suggests or enhances
Complete documentation for popEpi
Functions, R codes and Examples using the popEpi R package
Some associated functions: ICSS . Lexis_fpa . RPL . Surv . adjust . aggre . all_names_present . array_df_ratetable_utils . as.Date.yrs . as.aggre . cast_simple . cut_bound . direct_standardization . fac2num . flexible_argument . get.yrs . is.Date . is_leap_year . lexpand . lines.sirspline . lines.survmean . lines.survtab . lower_bound . ltable . meanpop_fi . na2zero . plot.rate . plot.sir . plot.sirspline . plot.survmean . plot.survtab . poisson.ci . popEpi-package . pophaz . popmort . prepExpo . print.aggre . print.rate . print.survtab . rate . rate_ratio . relpois . relpois_ag . robust_values . rpcurve . setaggre . setclass . setcolsnull . sibr . sir . sir_exp . sir_ratio . sire . sirspline . splitLexisDT . splitMulti . stdpop101 . stdpop18 . summary.aggre . summary.survtab . survmean . survtab . survtab_ag . try2int . 
Some associated R codes: S3_definitions.R . Surv.R . aggregating.R . data_document.R . direct_adjusting.R . evaluation.R . flexyargs.R . fractional_years.R . incidence_rates.R . incidence_rates_utils.R . lexpand.R . long_df_and_array.R . ltable.R . mean_survival.R . popEpi-package.R . pophaz.R . prevalence.R . relative_poisson.R . relative_poisson_net_survival.R . sir.R . sir_utils.R . splitLexisDT.R . splitMulti.R . splitting_utility_functions.R . startup_message.R . survival_aggregated.R . survival_lexis.R . survival_utility_functions.R . utility_functions.R . weighted_table.R .  Full popEpi package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

MARSS  
Multivariate Autoregressive State-Space Modeling
The MARSS package provides maximum-likelihood parameter estimation for constrained and unconstraine ...
Download / Learn more Package Citations See dependency  
LSDsensitivity  
Sensitivity Analysis Tools for 'LSD' Simulations
Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD ...
Download / Learn more Package Citations See dependency  
SADEG  
Stability Analysis in Differentially Expressed Genes
We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequence ...
Download / Learn more Package Citations See dependency  
rts2  
Log-Gaussian Cox Process Models with Approximations
Supports modelling real-time case data to facilitate the real-time surveillance of infectious disea ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA