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popEpi  

Functions for Epidemiological Analysis using Population Data
View on CRAN: Click here


Download and install popEpi package within the R console
Install from CRAN:
install.packages("popEpi")

Install from Github:
library("remotes")
install_github("cran/popEpi")

Install by package version:
library("remotes")
install_version("popEpi", "0.4.13")



Attach the package and use:
library("popEpi")
Maintained by
Joonas Miettinen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-09-29
Latest Update: 2025-01-31
Description:
Enables computation of epidemiological statistics, including those where counts or mortality rates of the reference population are used. Currently supported: excess hazard models (Dickman, Sloggett, Hills, and Hakulinen (2012) ), rates, mean survival times, relative/net survival (in particular the Ederer II (Ederer and Heise (1959)) and Pohar Perme (Pohar Perme, Stare, and Esteve (2012) ) estimators), and standardized incidence and mortality ratios, all of which can be easily adjusted for by covariates such as age. Fast splitting and aggregation of 'Lexis' objects (from package 'Epi') and other computations achieved using 'data.table'.
How to cite:
Joonas Miettinen (2015). popEpi: Functions for Epidemiological Analysis using Population Data. R package version 0.4.13, https://cran.r-project.org/web/packages/popEpi. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.2.1 (2015-09-29 17:33), 0.3.0 (2016-03-31 19:35), 0.3.1 (2016-04-25 16:52), 0.4.0 (2016-09-23 22:40), 0.4.1 (2016-11-08 18:36), 0.4.2 (2017-08-10 16:21), 0.4.3 (2017-09-05 19:39), 0.4.4 (2017-11-14 15:11), 0.4.5 (2018-05-16 18:34), 0.4.6 (2019-02-14 11:00), 0.4.7 (2019-03-18 17:50), 0.4.8 (2019-09-28 17:20), 0.4.9 (2021-10-29 10:20), 0.4.10 (2022-09-25 18:40), 0.4.11 (2023-08-23 16:30), 0.4.12 (2024-05-10 11:00), 0.4.13 (2025-01-31 12:00)
Other packages that cited popEpi R package
View popEpi citation profile
Other R packages that popEpi depends, imports, suggests or enhances
Complete documentation for popEpi
Functions, R codes and Examples using the popEpi R package
Some associated functions: ICSS . Lexis_fpa . RPL . Surv . adjust . aggre . all_names_present . array_df_ratetable_utils . as.Date.yrs . as.aggre . cast_simple . cut_bound . direct_standardization . fac2num . flexible_argument . get.yrs . is.Date . is_leap_year . lexpand . lines.sirspline . lines.survmean . lines.survtab . lower_bound . ltable . meanpop_fi . na2zero . plot.rate . plot.sir . plot.sirspline . plot.survmean . plot.survtab . poisson.ci . popEpi-package . pophaz . popmort . prepExpo . print.aggre . print.rate . print.survtab . rate . rate_ratio . relpois . relpois_ag . robust_values . rpcurve . setaggre . setclass . setcolsnull . sibr . sir . sir_exp . sir_ratio . sire . sirspline . splitLexisDT . splitMulti . stdpop101 . stdpop18 . summary.aggre . summary.survtab . survmean . survtab . survtab_ag . try2int . 
Some associated R codes: S3_definitions.R . Surv.R . aggregating.R . data_document.R . direct_adjusting.R . evaluation.R . flexyargs.R . fractional_years.R . incidence_rates.R . incidence_rates_utils.R . lexpand.R . long_df_and_array.R . ltable.R . mean_survival.R . popEpi-package.R . pophaz.R . prevalence.R . relative_poisson.R . relative_poisson_net_survival.R . sir.R . sir_utils.R . splitLexisDT.R . splitMulti.R . splitting_utility_functions.R . startup_message.R . survival_aggregated.R . survival_lexis.R . survival_utility_functions.R . utility_functions.R . weighted_table.R .  Full popEpi package functions and examples
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