Other packages > Find by keyword >

plinkQC  

Genotype Quality Control with 'PLINK'
View on CRAN: Click here


Download and install plinkQC package within the R console
Install from CRAN:
install.packages("plinkQC")

Install from Github:
library("remotes")
install_github("cran/plinkQC")

Install by package version:
library("remotes")
install_version("plinkQC", "1.0.0")



Attach the package and use:
library("plinkQC")
Maintained by
Hannah Meyer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-04
Latest Update: 2021-07-15
Description:
Genotyping arrays enable the direct measurement of an individuals genotype at thousands of markers. 'plinkQC' facilitates genotype quality control for genetic association studies as described by Anderson and colleagues (2010) . It makes 'PLINK' basic statistics (e.g. missing genotyping rates per individual, allele frequencies per genetic marker) and relationship functions accessible from 'R' and generates a per-individual and per-marker quality control report. Individuals and markers that fail the quality control can subsequently be removed to generate a new, clean dataset. Removal of individuals based on relationship status is optimised to retain as many individuals as possible in the study.
How to cite:
Hannah Meyer (2018). plinkQC: Genotype Quality Control with 'PLINK'. R package version 1.0.0, https://cran.r-project.org/web/packages/plinkQC. Accessed 09 Mar. 2026.
Previous versions and publish date:
0.1.0 (2018-11-04 17:00), 0.1.1 (2018-11-06 13:20), 0.2.0 (2018-11-09 15:20), 0.2.1 (2019-03-01 22:50), 0.2.2 (2019-06-19 23:40), 0.2.3 (2019-09-25 17:00), 0.3.0 (2019-10-19 07:20), 0.3.2 (2020-07-07 16:00), 0.3.3 (2021-02-08 23:40), 0.3.4 (2021-07-15 17:40), 1.0.0 (2025-11-25 22:10)
Other packages that cited plinkQC R package
View plinkQC citation profile
Other R packages that plinkQC depends, imports, suggests or enhances
Complete documentation for plinkQC
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

rzentra  
Client for the 'ZENTRA Cloud' API
Provides functionality to read settings, statuses and readings of weather stations from the 'ZENTRA ...
Download / Learn more Package Citations See dependency  
pooling  
Fit Poolwise Regression Models
Functions for calculating power and fitting regression models in studies where a biomarker is measur ...
Download / Learn more Package Citations See dependency  
Rgb  
The R Genome Browser
Classes and methods to efficiently handle (slice, annotate, draw ...) genomic features (such as gene ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ggblanket  
Simplify 'ggplot2' Visualisation
Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions. ...
Download / Learn more Package Citations See dependency  

26,293

R Packages

225,784

Dependencies

70,376

Author Associations

26,294

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA