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plinkQC  

Genotype Quality Control with 'PLINK'
View on CRAN: Click here


Download and install plinkQC package within the R console
Install from CRAN:
install.packages("plinkQC")

Install from Github:
library("remotes")
install_github("cran/plinkQC")

Install by package version:
library("remotes")
install_version("plinkQC", "0.3.4")



Attach the package and use:
library("plinkQC")
Maintained by
Hannah Meyer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-04
Latest Update: 2021-07-15
Description:
Genotyping arrays enable the direct measurement of an individuals genotype at thousands of markers. 'plinkQC' facilitates genotype quality control for genetic association studies as described by Anderson and colleagues (2010) . It makes 'PLINK' basic statistics (e.g. missing genotyping rates per individual, allele frequencies per genetic marker) and relationship functions accessible from 'R' and generates a per-individual and per-marker quality control report. Individuals and markers that fail the quality control can subsequently be removed to generate a new, clean dataset. Removal of individuals based on relationship status is optimised to retain as many individuals as possible in the study.
How to cite:
Hannah Meyer (2018). plinkQC: Genotype Quality Control with 'PLINK'. R package version 0.3.4, https://cran.r-project.org/web/packages/plinkQC. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1.0 (2018-11-04 17:00), 0.1.1 (2018-11-06 13:20), 0.2.0 (2018-11-09 15:20), 0.2.1 (2019-03-01 22:50), 0.2.2 (2019-06-19 23:40), 0.2.3 (2019-09-25 17:00), 0.3.0 (2019-10-19 07:20), 0.3.2 (2020-07-07 16:00), 0.3.3 (2021-02-08 23:40)
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