R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
plinkQC
View on CRAN: Click
here
Download and install plinkQC package within the R console
Install from CRAN:
install.packages("plinkQC")
Install from Github:
library("remotes")
install_github("cran/plinkQC")
Install by package version:
library("remotes")
install_version("plinkQC", "0.3.4")
Attach the package and use:
library("plinkQC")
Maintained by
Hannah Meyer
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-04
Latest Update: 2021-07-15
Description:
Genotyping arrays enable the direct measurement of an individuals
genotype at thousands of markers. 'plinkQC' facilitates genotype quality
control for genetic association studies as described by Anderson and
colleagues (2010) . It makes 'PLINK' basic
statistics (e.g. missing genotyping rates per individual, allele frequencies
per genetic marker) and relationship functions accessible from 'R' and
generates a per-individual and per-marker quality control report.
Individuals and markers that fail the quality control can subsequently be
removed to generate a new, clean dataset. Removal of individuals based on
relationship status is optimised to retain as many individuals as possible
in the study.
How to cite:
Hannah Meyer (2018). plinkQC: Genotype Quality Control with 'PLINK'. R package version 0.3.4, https://cran.r-project.org/web/packages/plinkQC. Accessed 21 Nov. 2024.
Previous versions and publish date:
Other packages that cited plinkQC R package
View plinkQC citation profile
Other R packages that plinkQC depends,
imports, suggests or enhances
Complete documentation for plinkQC
Functions, R codes and Examples using
the plinkQC R package
Some associated functions: checkFiltering . checkPlink . checkRemoveIDs . check_ancestry . check_het_and_miss . check_hwe . check_maf . check_relatedness . check_sex . check_snp_missingness . cleanData . evaluate_check_ancestry . evaluate_check_het_and_miss . evaluate_check_relatedness . evaluate_check_sex . overviewPerIndividualQC . overviewPerMarkerQC . perIndividualQC . perMarkerQC . plinkQC . relatednessFilter . run_check_ancestry . run_check_heterozygosity . run_check_missingness . run_check_relatedness . run_check_sex . testNumerics .
Some associated R codes: applyQC.R . individualQC.R . markerQC.R . plinkQC.R . utils.R . Full plinkQC package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
pkgdepends
Find recursive dependencies of 'R' packages from various
sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Gábor Csárdi (view profile)
deductive
Attempt to repair inconsistencies and missing values in
data records by using information from vali ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Mark van der Loo (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
crossrun
Joint distribution of number of crossings and the
longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Tore Wentzel-Larsen (view profile)
RcppHNSW
'Hnswlib' is a C++ library for Approximate Nearest Neighbors.
This package provides a minimal R int ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: James Melville (view profile)
kgschart
Restore underlining numeric data from rating history graph of
KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Kota Mori (view profile)