Other packages > Find by keyword >

plinkQC  

Genotype Quality Control with 'PLINK'
View on CRAN: Click here


Download and install plinkQC package within the R console
Install from CRAN:
install.packages("plinkQC")

Install from Github:
library("remotes")
install_github("cran/plinkQC")

Install by package version:
library("remotes")
install_version("plinkQC", "1.0.0")



Attach the package and use:
library("plinkQC")
Maintained by
Hannah Meyer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-04
Latest Update: 2021-07-15
Description:
Genotyping arrays enable the direct measurement of an individuals genotype at thousands of markers. 'plinkQC' facilitates genotype quality control for genetic association studies as described by Anderson and colleagues (2010) . It makes 'PLINK' basic statistics (e.g. missing genotyping rates per individual, allele frequencies per genetic marker) and relationship functions accessible from 'R' and generates a per-individual and per-marker quality control report. Individuals and markers that fail the quality control can subsequently be removed to generate a new, clean dataset. Removal of individuals based on relationship status is optimised to retain as many individuals as possible in the study.
How to cite:
Hannah Meyer (2018). plinkQC: Genotype Quality Control with 'PLINK'. R package version 1.0.0, https://cran.r-project.org/web/packages/plinkQC. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.1.0 (2018-11-04 17:00), 0.1.1 (2018-11-06 13:20), 0.2.0 (2018-11-09 15:20), 0.2.1 (2019-03-01 22:50), 0.2.2 (2019-06-19 23:40), 0.2.3 (2019-09-25 17:00), 0.3.0 (2019-10-19 07:20), 0.3.2 (2020-07-07 16:00), 0.3.3 (2021-02-08 23:40), 0.3.4 (2021-07-15 17:40), 1.0.0 (2025-11-25 22:10), 1.0.1 (2026-02-09 23:00)
Other packages that cited plinkQC R package
View plinkQC citation profile
Other R packages that plinkQC depends, imports, suggests or enhances
Complete documentation for plinkQC
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA