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pinfsc50  

Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
View on CRAN: Click here


Download and install pinfsc50 package within the R console
Install from CRAN:
install.packages("pinfsc50")

Install from Github:
library("remotes")
install_github("cran/pinfsc50")

Install by package version:
library("remotes")
install_version("pinfsc50", "1.3.0")



Attach the package and use:
library("pinfsc50")
Maintained by
Brian J. Knaus
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-01-29
Latest Update: 2023-12-05
Description:
Genomic data for the plant pathogen "Phytophthora infestans." It includes a variant file ('VCF'), a sequence file ('FASTA') and an annotation file ('GFF'). This package is intended to be used as example data for packages that work with genomic data.
How to cite:
Brian J. Knaus (2016). pinfsc50: Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis'. R package version 1.3.0, https://cran.r-project.org/web/packages/pinfsc50. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.0 (2016-01-29 05:58), 1.1.0 (2016-12-02 23:44), 1.2.0 (2020-06-03 19:30)
Other packages that cited pinfsc50 R package
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Complete documentation for pinfsc50
Functions, R codes and Examples using the pinfsc50 R package
Some associated functions: pinfsc50-package . pinfsc50_data . 
Some associated R codes: pinfsc50-package.R . pinfsc50.R .  Full pinfsc50 package functions and examples
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