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phyloregion
View on CRAN: Click
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Download and install phyloregion package within the R console
Install from CRAN:
install.packages("phyloregion")
Install from Github:
library("remotes")
install_github("cran/phyloregion")
Install by package version:
library("remotes")
install_version("phyloregion", "1.0.8")
Attach the package and use:
library("phyloregion")
Maintained by
Barnabas H. Daru
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-30
Latest Update: 2023-08-15
Description:
Computational infrastructure for biogeography, community ecology,
and biodiversity conservation (Daru et al. 2020) .
It is based on the methods described in Daru et al. (2020) .
The original conceptual work is described in Daru et al. (2017)
on patterns and processes of biogeographical regionalization. Additionally, the package
contains fast and efficient functions to compute more standard conservation measures
such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness
and global endangerment, as well as compositional turnover (e.g., beta diversity).
How to cite:
Barnabas H. Daru (2020). phyloregion: Biogeographic Regionalization and Macroecology. R package version 1.0.8, https://cran.r-project.org/web/packages/phyloregion. Accessed 21 Nov. 2024.
Previous versions and publish date:
Other packages that cited phyloregion R package
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Other R packages that phyloregion depends,
imports, suggests or enhances
Complete documentation for phyloregion
Functions, R codes and Examples using
the phyloregion R package
Some associated functions: EDGE . PD . PD_ses . africa . arc_labels . beta_diss . coldspots . collapse_range . counts . evol_distinct . fishnet . fitgom . functional_beta . get_clades . hexcols . indicators . long2sparse . map_trait . match_phylo_comm . mean_dist . nodepie . optimal_phyloregion . phylo_endemism . phylobeta . phylobeta_ses . phylobuilder . phyloregion-package . phyloregion . plot.phyloregion . plot.sparse . plot_pie . random_species . rast2comm . read.community . reexports . sdm . select_linkage . selectbylocation . timeslice . unifrac . weighted_endemism .
Some associated R codes: EDGE.R . PD_ses.R . WeightedEndemism.R . arc_labels.R . clustering.algorithm.R . coldspots.R . collapse_range.R . community.R . convert_input_data.R . counts.R . evol_distinct.R . fishnet.R . fitgom.R . functional_beta.R . get_clades.R . hexcols_rescale.R . indicator_species.R . map_traits.R . mean_matrix.R . nodepie.R . optimal_bioregion.R . pd.R . phylo_beta.R . phylo_builder.R . phylo_endemism.R . phylobeta_ses.R . phyloregion-package.R . phyloregion.R . plot_pie.R . random_species.R . sample2sparsematrix.R . sdm.R . see_sparse.R . selectbylocation.R . time_slice.R . utils.R . visualize_phyloregions.R . Full phyloregion package functions and examples
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