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peptider  

Evaluation of Diversity in Nucleotide Libraries
View on CRAN: Click here


Download and install peptider package within the R console
Install from CRAN:
install.packages("peptider")

Install from Github:
library("remotes")
install_github("cran/peptider")

Install by package version:
library("remotes")
install_version("peptider", "0.2.2")



Attach the package and use:
library("peptider")
Maintained by
Eric Hare
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-10-17
Latest Update: 2015-09-16
Description:
Evaluation of diversity in peptide libraries, including NNN, NNB, NNK/S, and 20/20 schemes. Custom encoding schemes can also be defined. Metrics for evaluation include expected coverage, relative efficiency, and the functional diversity of the library. Peptide-level inclusion probabilities are computable for both the native and custom encoding schemes.
How to cite:
Eric Hare (2013). peptider: Evaluation of Diversity in Nucleotide Libraries. R package version 0.2.2, https://cran.r-project.org/web/packages/peptider. Accessed 21 Dec. 2024.
Previous versions and publish date:
0.1.0 (2013-10-17 07:55), 0.1.1 (2013-10-19 15:53), 0.1.2 (2014-04-02 16:20), 0.1.3 (2014-05-07 07:57), 0.1.4 (2014-05-19 07:14), 0.1.5 (2014-07-28 14:49), 0.1.6 (2014-12-03 14:52), 0.1.7 (2015-02-03 06:38), 0.2.2 (2015-09-16 10:05), 0.2 (2015-04-11 07:37)
Other packages that cited peptider R package
View peptider citation profile
Other R packages that peptider depends, imports, suggests or enhances
Functions, R codes and Examples using the peptider R package
Some associated functions: BLOSUM80 . codons . coverage . detect . diversity . efficiency . encodingReduce . genNeighbors . genNeighbors_reduced . generateCustom . generateCustomLib . generateCustomNei . generateCustomProbs . getChoices . getCounts . getNeighbors . getNofNeighbors . libBuild . libscheme . makowski . ppeptide . scheme . schemes . 
Some associated R codes: Full peptider package functions and examples
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