Other packages > Find by keyword >

outbreaker2  

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
View on CRAN: Click here


Download and install outbreaker2 package within the R console
Install from CRAN:
install.packages("outbreaker2")

Install from Github:
library("remotes")
install_github("cran/outbreaker2")

Install by package version:
library("remotes")
install_version("outbreaker2", "1.1.3")



Attach the package and use:
library("outbreaker2")
Maintained by
Finlay Campbell
[Scholar Profile | Author Map]
First Published: 2017-11-28
Latest Update: 2022-05-23
Description:
Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. . Campbell, F, Cori A, Ferguson N, Jombart T. 2019. .
How to cite:
Finlay Campbell (2017). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. R package version 1.1.3, https://cran.r-project.org/web/packages/outbreaker2. Accessed 03 Jun. 2025.
Previous versions and publish date:
1.0-0 (2017-11-28 14:56), 1.0.1 (2018-03-06 18:52), 1.1.0 (2019-06-13 17:40), 1.1.1 (2020-02-07 18:10), 1.1.2 (2021-02-09 14:40)
Other packages that cited outbreaker2 R package
View outbreaker2 citation profile
Other R packages that outbreaker2 depends, imports, suggests or enhances
Complete documentation for outbreaker2
Downloads during the last 30 days
05/0405/0505/0605/0705/0805/0905/1005/1105/1205/1305/1405/1505/1605/1705/1805/1905/2005/2105/2205/2305/2405/2505/2605/2705/3106/01Downloads for outbreaker224681012141618TrendBars

Today's Hot Picks in Authors and Packages

treecm  
Centre of Mass Assessment and Consolidation of Trees
The centre of mass is a crucial data for arborists in order to consolidate a tree using steel or dy ...
Download / Learn more Package Citations See dependency  
dynr  
Dynamic Models with Regime-Switching
Intensive longitudinal data have become increasingly prevalent in various scientific disciplines. M ...
Download / Learn more Package Citations See dependency  
XML2R  
Easier XML Data Collection
XML2R is a framework that reduces the effort required to transformXML content into number of ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
bild  
A Package for BInary Longitudinal Data
Performs logistic regression for binary longitudinal data, allowing for serial dependence among obs ...
Download / Learn more Package Citations See dependency  
FSDAM  
Forward Stepwise Deep Autoencoder-Based Monotone NLDR
FS-DAM performs feature extraction through latent variables identification. Implementation is based ...
Download / Learn more Package Citations See dependency  

24,352

R Packages

207,311

Dependencies

65,804

Author Associations

24,331

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA