Other packages > Find by keyword >

outbreaker2  

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
View on CRAN: Click here


Download and install outbreaker2 package within the R console
Install from CRAN:
install.packages("outbreaker2")

Install from Github:
library("remotes")
install_github("cran/outbreaker2")

Install by package version:
library("remotes")
install_version("outbreaker2", "1.1.3")



Attach the package and use:
library("outbreaker2")
Maintained by
Finlay Campbell
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-11-28
Latest Update: 2022-05-23
Description:
Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. . Campbell, F, Cori A, Ferguson N, Jombart T. 2019. .
How to cite:
Finlay Campbell (2017). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. R package version 1.1.3, https://cran.r-project.org/web/packages/outbreaker2. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0-0 (2017-11-28 14:56), 1.0.1 (2018-03-06 18:52), 1.1.0 (2019-06-13 17:40), 1.1.1 (2020-02-07 18:10), 1.1.2 (2021-02-09 14:40)
Other packages that cited outbreaker2 R package
View outbreaker2 citation profile
Other R packages that outbreaker2 depends, imports, suggests or enhances
Complete documentation for outbreaker2
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA