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outbreaker2
View on CRAN: Click
here
Download and install outbreaker2 package within the R console
Install from CRAN:
install.packages("outbreaker2")
Install from Github:
library("remotes")
install_github("cran/outbreaker2")
Install by package version:
library("remotes")
install_version("outbreaker2", "1.1.3")
Attach the package and use:
library("outbreaker2")
Maintained by
Finlay Campbell
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.outbreaker2 . outbreaker2 citation info . outbreaker2 results . outbreaker2.pdf . outbreaker2: Rcpp API . Using custom priors, likelihood, or movements in outbreaker2 . Introduction to outbreaker2 . outbreaker2: package overview . outbreaker2_1.1.3.tar.gz . outbreaker2_1.1.3.zip . outbreaker2_1.1.3.zip . outbreaker2_1.1.3.zip . outbreaker2_1.1.3.tgz . outbreaker2_1.1.3.tgz . outbreaker2_1.1.3.tgz . outbreaker2_1.1.3.tgz . outbreaker2 archive . https://CRAN.R-project.org/package=outbreaker2 .
First Published: 2017-11-28
Latest Update: 2022-05-23
Description:
Bayesian reconstruction of disease outbreaks using epidemiological
and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser
C and Ferguson N. 2014. . Campbell, F,
Cori A, Ferguson N, Jombart T. 2019. .
How to cite:
Finlay Campbell (2017). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. R package version 1.1.3, https://cran.r-project.org/web/packages/outbreaker2. Accessed 03 Jun. 2025.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for outbreaker2
Functions, R codes and Examples using
the outbreaker2 R package
Some associated functions: bind_to_function . create_config . create_param . custom_likelihoods . custom_moves . custom_priors . fake_outbreak . get_cpp_api . outbreaker . outbreaker_chains . outbreaker_data . outbreaker_package . palettes . sim_ctd .
Some associated R codes: RcppExports.R . bind_moves.R . bind_to_function.R . create_config.R . create_param.R . custom_likelihoods.R . custom_moves.R . custom_priors.R . doc_data.R . get_cpp_api.R . internals.R . outbreaker.R . outbreaker_chains_methods.R . outbreaker_data.R . outbreaker_find_imports.R . outbreaker_init_mcmc.R . outbreaker_mcmc_shape.R . outbreaker_mcmc_store.R . outbreaker_move.R . package.R . palettes.R . ref_likelihoods.R . ref_priors.R . sim_ctd.R . zzz.R . Full outbreaker2 package functions and examples
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