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outbreaker2  

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
View on CRAN: Click here


Download and install outbreaker2 package within the R console
Install from CRAN:
install.packages("outbreaker2")

Install from Github:
library("remotes")
install_github("cran/outbreaker2")

Install by package version:
library("remotes")
install_version("outbreaker2", "1.1.4")



Attach the package and use:
library("outbreaker2")
Maintained by
Finlay Campbell
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-11-28
Latest Update: 2022-05-23
Description:
Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. . Campbell, F, Cori A, Ferguson N, Jombart T. 2019. .
How to cite:
Finlay Campbell (2017). outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. R package version 1.1.4, https://cran.r-project.org/web/packages/outbreaker2. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:38), 1.0-0 (2017-11-28 14:56), 1.0.1 (2018-03-06 18:52), 1.1.0 (2019-06-13 17:40), 1.1.1 (2020-02-07 18:10), 1.1.2 (2021-02-09 14:40), 1.1.3 (2022-05-23 14:20)
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Complete documentation for outbreaker2
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