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otargen
View on CRAN: Click
here
Download and install otargen package within the R console
Install from CRAN:
install.packages("otargen")
Install from Github:
library("remotes")
install_github("cran/otargen") Install by package version:
library("remotes")
install_version("otargen", "2.0.0") Attach the package and use:
library("otargen")
Maintained by
Amir Feizi
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-06-23
Latest Update: 2025-07-15
Description:
Interact seamlessly with Open Target Genetics' GraphQL endpoint to query and retrieve tidy data tables, facilitating the analysis of genetic data. For more information about the Open Target Genetics API().
How to cite:
Amir Feizi (2023). otargen: Access Open Target. R package version 2.0.0, https://cran.r-project.org/web/packages/otargen. Accessed 26 Aug. 2026.
Previous versions and publish date:
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Other R packages that otargen depends,
imports, suggests or enhances
Complete documentation for otargen
Functions, R codes and Examples using
the otargen R package
Some associated functions: colocalisationsForGene . geneInfo . genesForVariant . get_genes . gwasColocalisation . gwasColocalisationForRegion . gwasCredibleSet . gwasRegional . indexVariantsAndStudiesForTagVariant . manhattan . overlapInfoForStudy . pheWAS . plot_coloc . plot_l2g . plot_manhattan . plot_phewas . qtlColocalisationVariantQuery . qtlCredibleSet . run_custom_query . studiesAndLeadVariantsForGeneByL2G . studyInfo . studyLocus2GeneTable . studyVariants . tagVariantsAndStudiesForIndexVariant . topOverlappedStudies . variantInfo .
Some associated R codes: colocalisationsForGene.R . geneInfo.R . genesForVariant.R . getLociGenes.R . globals.R . gwasColocalisation.R . gwasColocalisationForRegion.R . gwasCredibleSet.R . gwasRegional.R . indexVariantsAndStudiesForTagVariant.R . manhattan.R . overlapInfoForStudy.R . pheWAS.R . plot_coloc.R . plot_l2g.R . plot_manhattan.R . plot_phewas.R . qtlColocalisationVariantQuery.R . qtlCredibleSet.R . run_custom_query.R . studiesAndLeadVariantsForGeneByL2G.R . studyInfo.R . studyLocus2GeneTable.R . studyVariants.R . tagVariantsAndStudiesForIndexVariant.R . topOverlappedStudies.R . variantInfo.R . Full otargen package functions and examples
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