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microeco
View on CRAN: Click
here
Download and install microeco package within the R console
Install from CRAN:
install.packages("microeco")
Install from Github:
library("remotes")
install_github("cran/microeco") Install by package version:
library("remotes")
install_version("microeco", "1.16.0") Attach the package and use:
library("microeco")
Maintained by
Chi Liu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-12
Latest Update: 2025-05-18
Description:
A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
How to cite:
Chi Liu (2020). microeco: Microbial Community Ecology Data Analysis. R package version 1.16.0, https://cran.r-project.org/web/packages/microeco. Accessed 15 Sep. 2026.
Previous versions and publish date:
(2026-07-09 06:30), 0.2.1 (2020-11-12 18:20), 0.3.0 (2020-11-15 18:00), 0.3.1 (2020-11-24 18:00), 0.3.3 (2021-03-27 11:10), 0.4.0 (2021-05-30 17:30), 0.5.1 (2021-09-01 23:50), 0.6.0 (2021-11-16 10:10), 0.6.5 (2022-01-07 16:32), 0.7.1 (2022-03-19 11:00), 0.7.5 (2022-04-20 16:52), 0.8.0 (2022-05-03 16:30), 0.9.0 (2022-05-17 11:10), 0.10.0 (2022-05-27 17:20), 0.10.1 (2022-05-30 14:20), 0.11.0 (2022-06-22 10:30), 0.12.0 (2022-10-04 14:30), 0.13.0 (2022-11-15 20:30), 0.14.0 (2023-02-10 10:30), 0.14.1 (2023-02-20 10:40), 0.15.0 (2023-03-27 11:10), 0.16.0 (2023-04-14 07:40), 0.17.0 (2023-05-02 20:40), 0.19.0 (2023-05-25 15:40), 0.19.5 (2023-06-09 07:50), 0.20.0 (2023-06-27 15:20), 1.0.0 (2023-09-06 11:10), 1.1.0 (2023-09-14 01:00), 1.2.0 (2023-11-08 09:50), 1.2.2 (2023-11-18 09:20), 1.3.0 (2023-12-11 16:10), 1.4.0 (2024-01-22 12:50), 1.5.0 (2024-03-04 14:20), 1.6.0 (2024-03-31 01:00), 1.7.0 (2024-05-15 10:10), 1.7.1 (2024-05-23 08:20), 1.8.0 (2024-06-28 06:40), 1.9.0 (2024-08-18 01:30), 1.9.1 (2024-08-23 08:40), 1.10.0 (2024-10-29 15:20), 1.11.0 (2024-12-15 13:00), 1.12.0 (2025-01-07 14:20), 1.13.0 (2025-02-08 14:50), 1.14.0 (2025-03-28 09:10), 1.15.0 (2025-05-18 13:10), 1.16.0 (2025-10-31 08:10), 2.0.0 (2026-01-27 08:50), 2.1.0 (2026-04-10 09:20), 2.2.0 (2026-05-14 16:20)
Other packages that cited microeco R package
View microeco citation profile
Other R packages that microeco depends,
imports, suggests or enhances
Complete documentation for microeco
Functions, R codes and Examples using
the microeco R package
Some associated functions: Tax4Fun2_KEGG . clone . dataset . dropallfactors . env_data_16S . fungi_func_FUNGuild . fungi_func_FungalTraits . microeco . microtable . otu_table_16S . otu_table_ITS . phylo_tree_16S . prok_func_FAPROTAX . prok_func_NJC19_list . sample_info_16S . sample_info_ITS . taxonomy_table_16S . taxonomy_table_ITS . tidy_taxonomy . trans_abund . trans_alpha . trans_beta . trans_classifier . trans_diff . trans_env . trans_func . trans_network . trans_nullmodel . trans_venn .
Some associated R codes: data.R . help.R . import.R . microtable.R . trans_abund.R . trans_alpha.R . trans_beta.R . trans_classifier.R . trans_diff.R . trans_env.R . trans_func.R . trans_network.R . trans_nullmodel.R . trans_venn.R . utility.R . Full microeco package functions and examples
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