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metevalue
View on CRAN: Click
here
Download and install metevalue package within the R console
Install from CRAN:
install.packages("metevalue")
Install from Github:
library("remotes")
install_github("cran/metevalue") Install by package version:
library("remotes")
install_version("metevalue", "0.2.4") Attach the package and use:
library("metevalue")
Maintained by
Yifan Yang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-10-28
Latest Update: 2023-05-26
Description:
In the omics data association studies, it is common to conduct the p-value corrections to control the false significance. Beyond the P-value corrections, E-value is recently studied to facilitate multiple testing correction based on V. Vovk and R. Wang (2021) . This package provides E-value calculation for DNA methylation data and RNA-seq data. Currently, five data formats are supported: DNA methylation levels using DMR detection tools (BiSeq, DMRfinder, MethylKit, Metilene and other DNA methylation tools) and RNA-seq data. The relevant references are listed below: Katja Hebestreit and Hans-Ulrich Klein (2022) ; Altuna Akalin et.al (2012) .
How to cite:
Yifan Yang (2022). metevalue: E-Value in the Omics Data Association Studies. R package version 0.2.4, https://cran.r-project.org/web/packages/metevalue. Accessed 05 Mar. 2026.
Previous versions and publish date:
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Other R packages that metevalue depends,
imports, suggests or enhances
Complete documentation for metevalue
Functions, R codes and Examples using
the metevalue R package
Some associated functions: demo_DMRfinder_DMRs . demo_DMRfinder_rate_combine . demo_biseq_DMR . demo_biseq_methyrate . demo_desq_out . demo_methylkit_met_all . demo_methylkit_methyrate . demo_metilene_input . demo_metilene_out . evalue_buildin_sql . evalue_buildin_var_fmt_nm . metevalue.DMRfinder.chk . metevalue.DMRfinder . metevalue.RNA_general . metevalue.biseq.chk . metevalue.biseq . metevalue.methylKit.chk . metevalue.methylKit . metevalue.metilene.chk . metevalue.metilene . varevalue.metilene . varevalue.single_general .
Some associated R codes: evalue_data_DMRfinder.R . evalue_data_biseq.R . evalue_data_chk.R . evalue_data_methylKit.R . evalue_data_metilene.R . evalue_main.R . Full metevalue package functions and examples
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