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metaprotr
View on CRAN: Click
here
Download and install metaprotr package within the R console
Install from CRAN:
install.packages("metaprotr")
Install from Github:
library("remotes")
install_github("cran/metaprotr")
Install by package version:
library("remotes")
install_version("metaprotr", "1.2.2")
Attach the package and use:
library("metaprotr")
Maintained by
Aaron Millan-Oropeza
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.metaprotr . https://forgemia.inra.fr/pappso/metaprotr . metaprotr results . metaprotr.pdf . metaprotr_1.2.2.tar.gz . metaprotr_1.2.2.zip . metaprotr_1.2.2.zip . metaprotr_1.2.2.zip . metaprotr_1.2.2.tgz . metaprotr_1.2.2.tgz . metaprotr_1.2.2.tgz . metaprotr_1.2.2.tgz . https://CRAN.R-project.org/package=metaprotr .
First Published: 2021-02-05
Latest Update: 2021-02-05
Description:
Set of tools for descriptive analysis of metaproteomics data generated from high-throughput
mass spectrometry instruments. These tools allow to cluster peptides and proteins abundance,
expressed as spectral counts, and to manipulate them in groups of metaproteins. This information
can be represented using multiple visualization functions to portray the global metaproteome
landscape and to differentiate samples or conditions, in terms of abundance of metaproteins,
taxonomic levels and/or functional annotation. The provided tools allow to implement flexible
analytical pipelines that can be easily applied to studies interested in metaproteomics analysis.
How to cite:
Aaron Millan-Oropeza (2021). metaprotr: Metaproteomics Post-Processing Analysis. R package version 1.2.2, https://cran.r-project.org/web/packages/metaprotr. Accessed 10 May. 2025.
Previous versions and publish date:
No previous versions
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Other R packages that metaprotr depends,
imports, suggests or enhances
Complete documentation for metaprotr
Functions, R codes and Examples using
the metaprotr R package
Some associated functions: add_kegg . add_taxonomy . crumble_taxonomy . export_ipath3 . export_robject . export_vennlists . fecal_waters . filter_shared . filter_text . filter_unshared . getsc_specific . identify_differences . inspect_sample_elements . load_protspeps . plot_dendocluster . plot_fulltaxo . plot_intensities . plot_intensities_ratio . plot_pca . plot_pietaxo . plot_stackedtaxo . plot_venn . remove_element . select_element . species_annot_fw . species_fw . venn_methods .
Some associated R codes: fecal_waters.R . globals.R . metaprotr_add_kegg.R . metaprotr_add_taxonomy.R . metaprotr_crumble_taxonomy.R . metaprotr_export_ipath3.R . metaprotr_export_robject.R . metaprotr_export_vennlists.R . metaprotr_filter_shared.R . metaprotr_filter_text.R . metaprotr_filter_unshared.R . metaprotr_getsc_specific.R . metaprotr_identify_differences.R . metaprotr_inspect_sample_elements.R . metaprotr_load_protspeps.R . metaprotr_plot_dendocluster.R . metaprotr_plot_fulltaxo.R . metaprotr_plot_intensities.R . metaprotr_plot_intensities_ratio.R . metaprotr_plot_pca.R . metaprotr_plot_pietaxo.R . metaprotr_plot_stackedtaxo.R . metaprotr_plot_venn.R . metaprotr_remove_element.R . metaprotr_select_element.R . species_annot_fw.R . species_fw.R . venn_methods.R . Full metaprotr package functions and examples
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