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linktree  

Estimate Transmission Assortativity Coefficients
View on CRAN: Click here


Download and install linktree package within the R console
Install from CRAN:
install.packages("linktree")

Install from Github:
library("remotes")
install_github("cran/linktree")

Install by package version:
library("remotes")
install_version("linktree", "0.1.0")



Attach the package and use:
library("linktree")
Maintained by
Cyril Geismar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-12-15
Latest Update: 2025-12-15
Description:
Estimates group transmission assortativity coefficients from transmission trees. Group transmission assortativity coefficients measure the tendency for individuals to transmit within their own group (e.g. age group, vaccination status, or location) compared to other groups. The package requires information on who infected whom, group membership for all individuals, and the relative sizes of each group in the population. For more details see Geismar et al. (2024) <doi:10.1371/journal.pone.0313037>.
How to cite:
Cyril Geismar (2025). linktree: Estimate Transmission Assortativity Coefficients. R package version 0.1.0, https://cran.r-project.org/web/packages/linktree. Accessed 14 Mar. 2026.
Previous versions and publish date:
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