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kindisperse
View on CRAN: Click
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Download and install kindisperse package within the R console
Install from CRAN:
install.packages("kindisperse")
Install from Github:
library("remotes")
install_github("cran/kindisperse")
Install by package version:
library("remotes")
install_version("kindisperse", "0.10.2")
Attach the package and use:
library("kindisperse")
Maintained by
Moshe-Elijah Jasper
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-03-31
Latest Update: 2021-07-28
Description:
Functions for simulating and estimating kinship-related dispersal. Based
on the methods described in M. Jasper, T.L. Schmidt., N.W. Ahmad, S.P. Sinkins & A.A.
Hoffmann (2019) "A genomic approach to inferring kinship
reveals limited intergenerational dispersal in the yellow fever mosquito".
Assumes an additive variance model of dispersal in two dimensions, compatible with
Wright's neighbourhood area. Simple and composite dispersal simulations are supplied,
as well as the functions needed to estimate parent-offspring dispersal for simulated or
empirical data, and to undertake sampling design for future field studies of dispersal.
For ease of use an integrated Shiny app is also included.
How to cite:
Moshe-Elijah Jasper (2021). kindisperse: Simulate and Estimate Close-Kin Dispersal Kernels. R package version 0.10.2, https://cran.r-project.org/web/packages/kindisperse
Other packages that cited kindisperse R package
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Other R packages that kindisperse depends,
imports, suggests or enhances
Functions, R codes and Examples using
the kindisperse R package
Some associated functions: DispersalModel-class . KinPairData-class . KinPairSimulation-class . KinPairSimulation_composite . KinPairSimulation_custom . KinPairSimulation_simple . access_sigmas . axials . axials_add . axials_combine . axials_decompose . axials_standard . axials_subtract . axpermute . axpermute_standard . axpermute_subtract . breeding_cycle . breeding_stage . check_valid_kinship . check_valid_lifestage . csv_to_kinpair . df_to_kinpair . dispersal_model . dispersal_vector . display_appdata . distances . elongate . filter_methods . filtertype . fs . get_dispersal_model . hs . is.DispersalModel . is.KinPairData . is.KinPairSimulation . kernelshape . kerneltype . kin_pair_data . kin_pair_simulation . kindisperse-package . kinpair_to_csv . kinpair_to_tibble . kinpair_to_tsv . kinship . lifestage . mentari . mount_appdata . read_kindata . rebase_dims . reset_appdata . reset_tempdata . retrieve_appdata . retrieve_tempdata . retrieveall_appdata . run_kindisperse . sample_kindist . sampling_stage . simdims . simgraph_data . simgraph_graph . simtype . simulate_kindist_composite . simulate_kindist_custom . simulate_kindist_simple . stages . tsv_to_kinpair . unmount_appdata . vector_to_kinpair . visible_stage . write_kindata .
Some associated R codes: DispersalModel.R . KinPairData.R . KinPairSimulation.R . app.R . app_ports.R . axial_helper_functions.R . axials_standard.R . data.R . dispersal_model.R . export_functions.R . import_kinpairs.R . kindisperse-package.R . sample_kindist.R . simgraph_data.R . simgraph_graph.R . simulate_kindist_composite.R . simulate_kindist_custom.R . simulate_kindist_simple.R . Full kindisperse package functions and examples
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