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kangar00
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Download and install kangar00 package within the R console
Install from CRAN:
install.packages("kangar00")
Install from Github:
library("remotes")
install_github("cran/kangar00")
Install by package version:
library("remotes")
install_version("kangar00", "1.4.2")
Attach the package and use:
library("kangar00")
Maintained by
Juliane Manitz
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[Scholar Profile | Author Map]
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First Published: 2017-04-27
Latest Update: 2022-12-06
Description:
Methods to extract information on pathways, genes and various single-nucleotid polymorphisms (SNPs) from online databases. It provides functions for data preparation and evaluation of genetic influence on a binary outcome using the logistic kernel machine test (LKMT). Three different kernel functions are offered to analyze genotype information in this variance component test: A linear kernel, a size-adjusted kernel and a network-based kernel (Friedrichs et al., 2017, ).
How to cite:
Juliane Manitz (2017). kangar00: Kernel Approaches for Nonlinear Genetic Association Regression. R package version 1.4.2, https://cran.r-project.org/web/packages/kangar00. Accessed 03 Dec. 2024.
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Functions, R codes and Examples using
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Some associated functions: GWASdata-class . anno . calc_kernel . gene_name_number-character-method . geno . get_ana-data.frame-method . get_anno-snp_info-pathway_info-method . get_network_matrix . gwas . hsa04020 . hsa04022_info . kangar00-package . kernel-class . lkmt-class . lkmt.net.kernel.hsa04020 . lkmt_test . lowrank_kernel-class . make_psd-matrix-method . net.kernel.hsa04020 . pathway-class . pathway_info-class . pheno . read_geno-character-method . rewire_network . rs10243170_info . set_names-matrix-method . set_one-matrix-method . snp_info-class .
Some associated R codes: data.R . Full kangar00 package functions and examples
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