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isocat
View on CRAN: Click
here
Download and install isocat package within the R console
Install from CRAN:
install.packages("isocat")
Install from Github:
library("remotes")
install_github("cran/isocat")
Install by package version:
library("remotes")
install_version("isocat", "0.3.0")
Attach the package and use:
library("isocat")
Maintained by
Caitlin Campbell
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-06-07
Latest Update: 2024-02-16
Description:
This resource provides tools to create, compare, and post-process
spatial isotope assignment models of animal origin. It generates
probability-of-origin maps for individuals based on user-provided tissue and
environment isotope values (e.g., as generated by IsoMAP, Bowen et al. [2013]
) using the framework established in Bowen et al.
(2010) ). The package 'isocat' can then
quantitatively compare and cluster these maps to group individuals by
similar origin. It also includes techniques for applying four approaches
(cumulative sum, odds ratio, quantile only, and quantile simulation) with
which users can summarize geographic origins and probable distance traveled
by individuals. Campbell et al. [2020] establishes several of the functions
included in this package .
How to cite:
Caitlin Campbell (2019). isocat: Isotope Origin Clustering and Assignment Tools. R package version 0.3.0, https://cran.r-project.org/web/packages/isocat
Previous versions and publish date:
Other packages that cited isocat R package
View isocat citation profile
Other R packages that isocat depends,
imports, suggests or enhances
Functions, R codes and Examples using
the isocat R package
Some associated functions: clusterSimmatrix . cumsumAtSamplingLocation . cumsumbelow . dot-assignmentMaker . dot-compareMyRasters . dot-findProductThenNormalize . getPrecisionPar . isoscape . isoscape_sd . isotopeAssignmentModel . makeOddsSurfaces . makeQuantileSimulationSurface . makeQuantileSurfaces . makecumsumSurface . meanAggregateClusterProbability . oddsAtSamplingLocation . projectSummaryMaxSurface . quantileAtSamplingLocation . schoenersD . simmatrixMaker .
Some associated R codes: CumSumSuite.R . clusterSimmatrix.R . exampleIsoscape.R . exampleIsoscape_sd.R . getPrecisionPar.R . isotopeAssignmentModel.R . makeOddsSurface.R . makeQuantileSimulationSurface.R . makeQuantileSurface.R . meanAggregateClusterProbability.R . oddsAtCoordinates.R . projectSummaryMaxSurface.R . quantileAtCoordinates.R . schoenersD.R . simmatrixMaker.R . Full isocat package functions and examples
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