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ibdsim2
View on CRAN: Click
here
Download and install ibdsim2 package within the R console
Install from CRAN:
install.packages("ibdsim2")
Install from Github:
library("remotes")
install_github("cran/ibdsim2")
Install by package version:
library("remotes")
install_version("ibdsim2", "2.1.1")
Attach the package and use:
library("ibdsim2")
Maintained by
Magnus Dehli Vigeland
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-28
Latest Update: 2023-08-17
Description:
Simulation of segments shared identical-by-descent (IBD) by
pedigree members. Using sex specific recombination rates along the
human genome (Halldorsson et al. (2019)
), phased chromosomes are simulated for
all pedigree members. Applications include calculation of realised
relatedness coefficients and IBD segment distributions. 'ibdsim2' is
part of the 'ped suite' collection of packages for pedigree analysis.
A detailed presentation of the 'ped suite', including a separate
chapter on 'ibdsim2', is available in the book 'Pedigree analysis in
R' (Vigeland, 2021, ISBN:9780128244302). A 'shiny' app for visualising
and comparing IBD distributions is available at
.
How to cite:
Magnus Dehli Vigeland (2020). ibdsim2: Simulation of Chromosomal Regions Shared by Family Members. R package version 2.1.1, https://cran.r-project.org/web/packages/ibdsim2. Accessed 06 Jan. 2025.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for ibdsim2
Functions, R codes and Examples using
the ibdsim2 R package
Some associated functions: convertPos . customMap . estimateCoeffs . extractIds . findPattern . haploDraw . ibdsim . ibdsim2-package . karyoDiploid . karyoHaploid . karyogram2 . loadMap . maplengths . plotSegmentDistribution . profileSimIBD . realised . segmentStats . uniformMap . zeroIBD .
Some associated R codes: RcppExports.R . estimateCoeffs.R . findPattern.R . genedrop.R . haploDraw.R . ibdsim.R . ibdsim2-package.R . karyogram.R . map_constructors.R . map_utils.R . meiosis.R . plotSegmentDistribution.R . profileSimIBD.R . realisedCoeffs.R . segment_utils.R . utils.R . zeroIBD.R . Full ibdsim2 package functions and examples
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