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ibdsim2  

Simulation of Chromosomal Regions Shared by Family Members
View on CRAN: Click here


Download and install ibdsim2 package within the R console
Install from CRAN:
install.packages("ibdsim2")

Install from Github:
library("remotes")
install_github("cran/ibdsim2")

Install by package version:
library("remotes")
install_version("ibdsim2", "2.1.1")



Attach the package and use:
library("ibdsim2")
Maintained by
Magnus Dehli Vigeland
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-28
Latest Update: 2023-08-17
Description:
Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Halldorsson et al. (2019) ), phased chromosomes are simulated for all pedigree members. Applications include calculation of realised relatedness coefficients and IBD segment distributions. 'ibdsim2' is part of the 'ped suite' collection of packages for pedigree analysis. A detailed presentation of the 'ped suite', including a separate chapter on 'ibdsim2', is available in the book 'Pedigree analysis in R' (Vigeland, 2021, ISBN:9780128244302). A 'shiny' app for visualising and comparing IBD distributions is available at .
How to cite:
Magnus Dehli Vigeland (2020). ibdsim2: Simulation of Chromosomal Regions Shared by Family Members. R package version 2.1.1, https://cran.r-project.org/web/packages/ibdsim2. Accessed 03 Dec. 2024.
Previous versions and publish date:
1.1 (2020-06-28 11:40), 1.2 (2020-07-12 00:00), 1.3.0 (2020-11-13 13:50), 1.4.0 (2021-07-24 06:30), 1.5.0 (2022-06-07 22:40), 2.0.0 (2023-08-17 17:52), 2.1.0 (2024-08-17 04:40)
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