Other packages > Find by keyword >

hisse  

Hidden State Speciation and Extinction
View on CRAN: Click here


Download and install hisse package within the R console
Install from CRAN:
install.packages("hisse")

Install from Github:
library("remotes")
install_github("cran/hisse")

Install by package version:
library("remotes")
install_version("hisse", "2.1.11")



Attach the package and use:
library("hisse")
Maintained by
Jeremy Beaulieu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-02-20
Latest Update: 2023-02-11
Description:
Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) .
How to cite:
Jeremy Beaulieu (2015). hisse: Hidden State Speciation and Extinction. R package version 2.1.11, https://cran.r-project.org/web/packages/hisse. Accessed 25 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:47), 1.0 (2015-02-20 06:35), 1.1 (2015-06-17 00:42), 1.2 (2015-09-25 13:41), 1.3 (2015-10-03 07:58), 1.4 (2016-01-07 10:22), 1.5 (2016-03-19 14:33), 1.6 (2016-03-30 08:14), 1.7 (2016-06-14 08:29), 1.8.1 (2017-02-21 08:02), 1.8.2 (2017-04-05 00:39), 1.8.4 (2017-07-23 10:26), 1.8.5 (2017-10-10 18:57), 1.8.6 (2018-09-25 16:10), 1.8.7 (2018-10-19 00:40), 1.8.8 (2018-10-20 00:00), 1.8.9 (2018-11-06 17:20), 1.8 (2016-08-25 10:00), 1.9.0 (2019-01-28 17:40), 1.9.1 (2019-02-20 07:10), 1.9.4 (2019-05-10 22:00), 1.9.5 (2019-07-11 23:43), 1.9.6 (2019-12-06 19:00), 1.9.8 (2020-06-15 14:50), 1.9.9 (2020-10-20 22:00), 1.9.10 (2020-10-28 10:00), 1.9.13 (2021-01-19 16:40), 1.9.18 (2021-02-20 16:40), 1.9.19 (2021-05-15 08:10), 2.1.5 (2021-11-11 19:00), 2.1.6 (2021-11-16 09:20), 2.1.8 (2022-06-09 05:40), 2.1.9 (2022-06-15 17:40), 2.1.10 (2023-01-19 20:30)
Other packages that cited hisse R package
View hisse citation profile
Other R packages that hisse depends, imports, suggests or enhances
Complete documentation for hisse
Functions, R codes and Examples using the hisse R package
Some associated functions: AddFossilPoints . AddStratIntervals . GeoHiSSE . GeoHiSSE.old . GetAICWeights . GetFossils . MiSSE . MiSSEGreedy . MiSSENet . MuHiSSE . PlotMisseSpace . ProcessSimSample . ProcessSimStrat . PruneRedundantModels . SimulateGeoHiSSE . SummarizeMiSSEGreedy . TipCorrelation . TranslateParsMakerGeoHiSSE . generateMiSSEGreedyCombinations . hisse . hisse.old . hisseNull4.old . makeGeoHiSSELikelihood . makeHiSSELikelihood . marginRecon.old . marginReconGeoSSE . marginReconGeoSSE.old . marginReconHiSSE . marginReconMiSSE . marginReconMuHiSSE . modelAveRates . plotGeoHiSSE . plotHisse . plotMiSSE . plotMuHiSSE . simToPhylo . simulateHisse . supportRegion.old . supportRegionGeoSSE . supportRegionGeoSSE.old . supportRegionHiSSE . supportRegionMiSSE . supportRegionMuHiSSE . transMat . transMatMakerGeoHiSSE . transMatMakerHiSSE . transMatMakerMuHiSSE . 
Some associated R codes: FindGenerations.R . GenerateValues.R . GetModelWeight.R . PruneRedundantModels.R . fossilUtilities.R . geohisse.R . geohisse.old.R . geohisseLikelihood.R . getModelAveTipRates.R . hisse.R . hisse.old.R . hisseLikelihood.R . hisseNull4.old.R . marginRecon.R . misse.R . misseNet.R . muhisse.R . plotContMapHiSSE.R . plotHisse.R . simulateGeoHiSSE.R . simulateHisse.R . singleModels.R . startingPointGenerators.R . summarizeHisse.R . supportRegion.old.R . supportRegionGeoSSE.R . supportRegionGeoSSE.old.R . supportRegionHiSSE.R . supportRegionMiSSE.R . supportRegionMuHiSSE.R . tipCorrelation.R . transMat.old.R . transMatGeoHiSSE.R . transMatGeoHiSSE.old.R . transMatHiSSE.R . transMatMuHiSSE.R .  Full hisse package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
hwep  
Hardy-Weinberg Equilibrium in Polyploids
Inference concerning equilibrium and random mating in autopolyploids. Methods are available to test ...
Download / Learn more Package Citations See dependency  
connectwidgets  
Organize and Curate Your Content Within 'Posit Connect'
A collection of helper functions and 'htmlwidgets' to help publishers curate content collections on ...
Download / Learn more Package Citations See dependency  
missDiag  
Comparing Observed and Imputed Values under MAR and MCAR
Implements the computation of discrepancy statistics summarizing differences between the density of ...
Download / Learn more Package Citations See dependency  
commonsMath  
JAR Files of the Apache Commons Mathematics Library
'Java' JAR files for the Apache Commons Mathematics Library for use by users and other packages. ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA