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ggPMX
View on CRAN: Click
here
Download and install ggPMX package within the R console
Install from CRAN:
install.packages("ggPMX")
Install from Github:
library("remotes")
install_github("cran/ggPMX")
Install by package version:
library("remotes")
install_version("ggPMX", "1.2.11")
Attach the package and use:
library("ggPMX")
Maintained by
Matthew Fidler
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-05-16
Latest Update: 2023-06-16
Description:
At Novartis, we aimed at standardizing the set of diagnostic plots used for modeling
activities in order to reduce the overall effort required for generating such plots.
For this, we developed a guidance that proposes an adequate set of diagnostics and a toolbox,
called 'ggPMX' to execute them. 'ggPMX' is a toolbox that can generate all diagnostic plots at a quality sufficient
for publication and submissions using few lines of code. This package focuses on plots recommended by ISoP
. While not required, you can get/install the 'R' 'lixoftConnectors'
package in the 'Monolix' installation, as described at the following url
.
When 'lixoftConnectors' is available, 'R' can use 'Monolix' directly to create the required
Chart Data instead of exporting it from the 'Monolix' gui.
How to cite:
Matthew Fidler (2019). ggPMX: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models. R package version 1.2.11, https://cran.r-project.org/web/packages/ggPMX
Previous versions and publish date:
0.9.1 (2019-05-16 13:10), 0.9.2 (2019-05-17 15:40), 0.9.3 (2019-05-26 17:10), 0.9.4 (2019-06-06 14:00), 0.9.6 (2019-10-27 21:30), 0.9.7 (2019-11-18 06:50), 0.9.8 (2019-11-19 11:30), 1.0 (2020-01-12 13:10), 1.1.1 (2020-05-15 01:50), 1.1.2 (2020-06-25 17:50), 1.1 (2020-04-09 14:50), 1.2.1 (2021-05-25 18:00), 1.2.2 (2021-05-28 11:30), 1.2.3 (2021-05-29 18:50), 1.2.4 (2021-09-20 18:30), 1.2.5 (2022-01-15 17:22), 1.2.6 (2022-02-01 19:50), 1.2.7 (2022-06-10 01:00), 1.2.8 (2022-06-18 01:10), 1.2.9 (2023-06-01 11:10), 1.2.10 (2023-06-17 01:20)
Other packages that cited ggPMX R package
View ggPMX citation profile
Other R packages that ggPMX depends,
imports, suggests or enhances
Functions, R codes and Examples using
the ggPMX R package
Some associated functions: abbrev . add_draft . check_shrink . distrib . eta_cov . eta_cov_plot . eta_distribution_plot . eta_pairs . eval_sym_parent_env . getPmxOption . get_abbrev . get_cats . get_conts . get_covariates . get_data . get_occ . get_plot . get_plot_config . get_strats . ggPMX . gtable_remove_grobs . individual . input_finegrid . is.pmx_gpar . l_left_join . load_config . load_data_set . load_source . n_pages . param_table . parse_mlxtran . pk_occ . pk_pd . plot_names . plot_pmx.distrib . plot_pmx.eta_cov . plot_pmx.eta_pairs . plot_pmx.individual . plot_pmx . plot_pmx.pmx_dens . plot_pmx.pmx_gpar . plot_pmx.pmx_qq . plot_pmx.residual . plot_shrink . plots . pmx . pmxOptions . pmx_bloq . pmx_combine_tables . pmx_comp_shrink . pmx_config . pmx_copy . pmx_cov . pmx_dens . pmx_endpoint . pmx_file_path . pmx_filter . pmx_get_configs . pmx_get_extension . pmx_gpar . pmx_index_table . pmx_is.nm.table.list . pmx_list_nm_tables . pmx_list_nm_tables_manual . pmx_make_extension . pmx_manual_nm_import . pmx_merge_firstonly . pmx_msg . pmx_nlmixr . pmx_nm . pmx_parse_nm_files . pmx_plot . pmx_plot_cats . pmx_plot_eta_matrix . pmx_plot_individual . pmx_plot_iwres_dens . pmx_plot_vpc . pmx_qq . pmx_qq_plot . pmx_raw_to_tibble . pmx_read_args . pmx_read_funs . pmx_read_nm_files . pmx_read_nm_model . pmx_read_nm_tables . pmx_register_plot . pmx_report . pmx_report_template . pmx_settings . pmx_shrink . pmx_sim . pmx_theme . pmx_tidyr_new_interface . pmx_update . pmx_update_extension . pmx_vpc . pmx_vpc_bin . pmx_vpc_ci . pmx_vpc_obs . pmx_vpc_pi . pmx_vpc_rug . print.abbreviation . print.configs . print.pmxClass . print.pmxConfig . print.pmx_gpar . read_extfile . read_input . read_mlx_ind_est . read_mlx_par_est . read_mlx_pred . reexports . residual . residual_scatter . set_abbrev . set_data . set_plot . sub-.pmx_gpar . theophylline . wrap_formula .
Some associated R codes: assertions.R . classInt.R . config.R . generics.R . ggPMX-options.R . ggPMX-package.R . ggforce-facet-paginate.R . gpar.R . nlmixr.R . nonmem_reader.R . param_table.R . plot-base.R . plot-density.R . plot-distribution.R . plot-eta-cov.R . plot-eta-pairs.R . plot-individual.R . plot-qq.R . plot-residual.R . plot-themes.R . plot-vpc.R . pmx-add-plot.R . pmx-all-compute.R . pmx-all-plots.R . pmx-data.R . pmx-filter.R . pmx-plots-density.R . pmx-plots-distibution.R . pmx-plots-eta-cov.R . pmx-plots-individual.R . pmx-plots-matrix.R . pmx-plots-quantile.R . pmx-plots-scatter.R . pmx-plots-vpc.R . pmx-post_load.R . pmx-reader.R . pmx-report.R . pmxClass.R . pmx_list_nm_tables.R . pmx_manual_import.R . pmx_read_nm_files.R . pmx_read_nm_model.R . pmx_read_nm_tables.R . pmx_utils_nonmem_reader.R . read_extfile.R . utils.R . zzz.R . Full ggPMX package functions and examples
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