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genio  

Genetics Input/Output Functions
View on CRAN: Click here


Download and install genio package within the R console
Install from CRAN:
install.packages("genio")

Install from Github:
library("remotes")
install_github("cran/genio")

Install by package version:
library("remotes")
install_version("genio", "1.1.2")



Attach the package and use:
library("genio")
Maintained by
Alejandro Ochoa
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-05-24
Latest Update: 2023-01-06
Description:
Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.
How to cite:
Alejandro Ochoa (2019). genio: Genetics Input/Output Functions. R package version 1.1.2, https://cran.r-project.org/web/packages/genio
Previous versions and publish date:
1.0.9 (2019-05-24 18:11), 1.0.10 (2019-05-28 23:03), 1.0.12 (2019-12-18 00:00), 1.0.23 (2021-06-11 16:40), 1.0.25 (2021-07-27 00:10), 1.1.1 (2022-04-27 20:20)
Other packages that cited genio R package
View genio citation profile
Other R packages that genio depends, imports, suggests or enhances
Functions, R codes and Examples using the genio R package
Some associated functions: count_lines . delete_files_grm . delete_files_phen . delete_files_plink . genio . geno_to_char . ind_to_fam . make_bim . make_fam . read_bed . read_bim . read_eigenvec . read_fam . read_grm . read_ind . read_matrix . read_phen . read_plink . read_snp . require_files_grm . require_files_phen . require_files_plink . sex_to_char . sex_to_int . tidy_kinship . write_bed . write_bim . write_eigenvec . write_fam . write_grm . write_ind . write_matrix . write_phen . write_plink . write_snp . 
Some associated R codes: RcppExports.R . add_ext.R . add_ext_read.R . count_lines.R . delete_files_generic.R . delete_files_grm.R . delete_files_phen.R . delete_files_plink.R . genio.R . geno_to_char.R . ind_to_fam.R . make_bim.R . make_fam.R . mat_sym_to_vec.R . read_bed.R . read_bim.R . read_eigenvec.R . read_fam.R . read_grm.R . read_grm_single.R . read_ind.R . read_matrix.R . read_phen.R . read_plink.R . read_snp.R . read_tab_generic.R . require_files_generic.R . require_files_grm.R . require_files_phen.R . require_files_plink.R . sex_to_char.R . sex_to_int.R . tidy_kinship.R . validate_tab_generic.R . vec_to_mat_sym.R . write_bed.R . write_bim.R . write_eigenvec.R . write_fam.R . write_grm.R . write_grm_single.R . write_ind.R . write_matrix.R . write_phen.R . write_plink.R . write_snp.R . write_tab_generic.R .  Full genio package functions and examples
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