Other packages > Find by keyword >

genio  

Genetics Input/Output Functions
View on CRAN: Click here


Download and install genio package within the R console
Install from CRAN:
install.packages("genio")

Install from Github:
library("remotes")
install_github("cran/genio")

Install by package version:
library("remotes")
install_version("genio", "1.1.2")



Attach the package and use:
library("genio")
Maintained by
Alejandro Ochoa
[Scholar Profile | Author Map]
First Published: 2019-05-24
Latest Update: 2023-01-06
Description:
Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.
How to cite:
Alejandro Ochoa (2019). genio: Genetics Input/Output Functions. R package version 1.1.2, https://cran.r-project.org/web/packages/genio. Accessed 07 Apr. 2025.
Previous versions and publish date:
1.0.9 (2019-05-24 18:11), 1.0.10 (2019-05-28 23:03), 1.0.12 (2019-12-18 00:00), 1.0.23 (2021-06-11 16:40), 1.0.25 (2021-07-27 00:10), 1.1.1 (2022-04-27 20:20)
Other packages that cited genio R package
View genio citation profile
Other R packages that genio depends, imports, suggests or enhances
Complete documentation for genio
Functions, R codes and Examples using the genio R package
Some associated functions: count_lines . delete_files_grm . delete_files_phen . delete_files_plink . genio . geno_to_char . ind_to_fam . make_bim . make_fam . read_bed . read_bim . read_eigenvec . read_fam . read_grm . read_ind . read_matrix . read_phen . read_plink . read_snp . require_files_grm . require_files_phen . require_files_plink . sex_to_char . sex_to_int . tidy_kinship . write_bed . write_bim . write_eigenvec . write_fam . write_grm . write_ind . write_matrix . write_phen . write_plink . write_snp . 
Some associated R codes: RcppExports.R . add_ext.R . add_ext_read.R . count_lines.R . delete_files_generic.R . delete_files_grm.R . delete_files_phen.R . delete_files_plink.R . genio.R . geno_to_char.R . ind_to_fam.R . make_bim.R . make_fam.R . mat_sym_to_vec.R . read_bed.R . read_bim.R . read_eigenvec.R . read_fam.R . read_grm.R . read_grm_single.R . read_ind.R . read_matrix.R . read_phen.R . read_plink.R . read_snp.R . read_tab_generic.R . require_files_generic.R . require_files_grm.R . require_files_phen.R . require_files_plink.R . sex_to_char.R . sex_to_int.R . tidy_kinship.R . validate_tab_generic.R . vec_to_mat_sym.R . write_bed.R . write_bim.R . write_eigenvec.R . write_fam.R . write_grm.R . write_grm_single.R . write_ind.R . write_matrix.R . write_phen.R . write_plink.R . write_snp.R . write_tab_generic.R .  Full genio package functions and examples
Downloads during the last 30 days
03/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/0404/0504/06Downloads for genio2025303540455055606570TrendBars

Today's Hot Picks in Authors and Packages

nutriNetwork  
Structure Learning with Copula Graphical Model
Statistical tool for learning the structure of direct associations among variables for continuous d ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
MetaAnalyser  
An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine
An interactive application to visualise meta-analysis data as a physical weighing machine. The inte ...
Download / Learn more Package Citations See dependency  
ASMap  
Linkage Map Construction using the MSTmap Algorithm
Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Ha ...
Download / Learn more Package Citations See dependency  
probout  
Unsupervised Multivariate Outlier Probabilities for Large Datasets
Estimates unsupervised outlier probabilities for multivariate numeric data with many observations fr ...
Download / Learn more Package Citations See dependency  
letsR  
Data Handling and Analysis in Macroecology
Handling, processing, and analyzing geographic data on species' distributions and environmental var ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

64,867

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA