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geneSLOPE  

Genome-Wide Association Study with SLOPE
View on CRAN: Click here


Download and install geneSLOPE package within the R console
Install from CRAN:
install.packages("geneSLOPE")

Install from Github:
library("remotes")
install_github("cran/geneSLOPE")

Install by package version:
library("remotes")
install_version("geneSLOPE", "0.38.2")



Attach the package and use:
library("geneSLOPE")
Maintained by
Piotr Sobczyk
[Scholar Profile | Author Map]
First Published: 2016-02-02
Latest Update: 2023-08-16
Description:
Genome-wide association study (GWAS) performed with SLOPE, short for Sorted L-One Penalized Estimation, a method for estimating the vector of coefficients in a linear model. In the first step of GWAS, single nucleotide polymorphisms (SNPs) are clumped according to their correlations and distances. Then, SLOPE is performed on the data where each clump has one representative. Malgorzata Bogdan, Ewout van den Berg, Chiara Sabatti, Weijie Su and Emmanuel Candes (2014) "SLOPE - Adaptive Variable Selection via Convex Optimization" .
How to cite:
Piotr Sobczyk (2016). geneSLOPE: Genome-Wide Association Study with SLOPE. R package version 0.38.2, https://cran.r-project.org/web/packages/geneSLOPE. Accessed 20 Feb. 2025.
Previous versions and publish date:
0.36.6 (2016-02-02 12:34), 0.37.0 (2016-10-26 15:43)
Other packages that cited geneSLOPE R package
View geneSLOPE citation profile
Other R packages that geneSLOPE depends, imports, suggests or enhances
Complete documentation for geneSLOPE
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