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geneSLOPE
View on CRAN: Click
here
Download and install geneSLOPE package within the R console
Install from CRAN:
install.packages("geneSLOPE")
Install from Github:
library("remotes")
install_github("cran/geneSLOPE") Install by package version:
library("remotes")
install_version("geneSLOPE", "0.38.3") Attach the package and use:
library("geneSLOPE")
Maintained by
Piotr Sobczyk
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-02-02
Latest Update: 2025-06-20
Description:
Genome-wide association study (GWAS) performed with SLOPE,
short for Sorted L-One Penalized Estimation, a
method for estimating the vector of coefficients in a linear model.
In the first step of GWAS, single nucleotide polymorphisms (SNPs) are
clumped according to their correlations and distances.
Then, SLOPE is performed on the data where each clump has
one representative.
Malgorzata Bogdan, Ewout van den Berg, Chiara Sabatti, Weijie Su
and Emmanuel Candes (2014)
"SLOPE - Adaptive Variable Selection via Convex Optimization"
.
How to cite:
Piotr Sobczyk (2016). geneSLOPE: Genome-Wide Association Study with SLOPE. R package version 0.38.3, https://cran.r-project.org/web/packages/geneSLOPE. Accessed 26 Aug. 2026.
Previous versions and publish date:
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Other R packages that geneSLOPE depends,
imports, suggests or enhances
Complete documentation for geneSLOPE
Functions, R codes and Examples using
the geneSLOPE R package
Some associated functions: clump_snps . clumpingResult . create_lambda . geneSLOPE . gui_geneSLOPE . identify_clump.clumpingResult . identify_clump . identify_clump.selectionResult . phenotypeData . plot.clumpingResult . plot.selectionResult . print.clumpingResult . print.phenotypeData . print.screeningResult . print.selectionResult . read_phenotype . screen_snps . screeningResult . select_snps . selectionResult . summary.clumpingResult . summary.phenotypeData . summary.screeningResult . summary.selectionResult .
Some associated R codes: auxilliary.R . clump_snps.R . clumpingResult.R . geneSLOPE.R . gui_geneSLOPE.R . identify_clump.R . lambda.R . phenotypeData.R . read_phenotype.R . screen_snps.R . screeningResult.R . select_snps.R . selectionResult.R . Full geneSLOPE package functions and examples
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