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gap
View on CRAN: Click
here
Download and install gap package within the R console
Install from CRAN:
install.packages("gap")
Install from Github:
library("remotes")
install_github("cran/gap")
Install by package version:
library("remotes")
install_version("gap", "1.6")
Attach the package and use:
library("gap")
Maintained by
Jing Hua Zhao
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
gap.datasets . 10.32614/CRAN.package.gap . gap citation info . gap results . gap.pdf . gap . Shiny for Genetic Analysis Package (gap) Designs . gap: genetic analysis package . gap_1.6.tar.gz . gap_1.6.zip . gap_1.6.zip . gap_1.6.zip . gap_1.6.tgz . gap_1.6.tgz . gap_1.6.tgz . gap_1.6.tgz . gap_1.6.tgz . gap_1.6.tgz . gap archive . https://CRAN.R-project.org/package=gap .
First Published: 2004-01-14
Latest Update: 2023-08-26
Description:
As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
How to cite:
Jing Hua Zhao (2004). gap: Genetic Analysis Package. R package version 1.6, https://cran.r-project.org/web/packages/gap. Accessed 20 Feb. 2025.
Previous versions and publish date:
0.3 (2004-01-14 08:11), 0.4 (2004-01-18 21:41), 0.5 (2004-01-22 15:04), 0.7 (2004-02-02 19:47), 0.8-2 (2004-08-17 08:19), 0.8-3 (2004-12-21 21:42), 0.8 (2004-02-29 10:05), 1.0-1 (2005-04-10 23:12), 1.0-2 (2005-04-15 08:50), 1.0-3 (2005-07-24 15:32), 1.0-5 (2006-01-17 11:14), 1.0-6 (2006-02-13 12:05), 1.0-8 (2006-04-04 10:57), 1.0-9 (2006-09-21 17:37), 1.0-10 (2007-01-05 14:21), 1.0-11 (2007-06-14 08:29), 1.0-12 (2007-07-31 19:45), 1.0-13 (2007-10-02 10:39), 1.0-14 (2008-03-02 14:51), 1.0-15 (2008-04-10 18:25), 1.0-17 (2009-01-02 19:12), 1.0-20 (2009-08-26 16:29), 1.0-21 (2009-11-22 17:20), 1.0-22 (2010-01-02 14:16), 1.0-23 (2010-06-25 07:46), 1.1-0 (2010-11-17 17:04), 1.1-1 (2010-12-10 16:02), 1.1-2 (2011-05-03 17:27), 1.1-3 (2011-12-06 18:09), 1.1-6 (2012-03-15 09:12), 1.1-8 (2013-02-26 16:37), 1.1-9 (2013-04-08 12:31), 1.1-10 (2013-09-30 17:40), 1.1-12 (2014-08-18 16:56), 1.1-13 (2015-06-03 14:38), 1.1-14 (2015-06-04 20:42), 1.1-16 (2015-06-06 08:56), 1.1-17 (2017-04-19 13:10), 1.1-20 (2017-11-25 17:55), 1.1-21 (2018-01-24 12:40), 1.1-22 (2018-06-08 18:58), 1.2.1 (2019-06-05 14:00), 1.2.2 (2020-02-02 16:10), 1.2.3-1 (2021-04-21 11:40), 1.2.3-6 (2022-05-14 00:10), 1.3-1 (2022-10-21 14:25), 1.4-2 (2023-01-09 19:00), 1.5-1 (2023-01-22 22:40), 1.5-3 (2023-08-26 16:10), 1.5 (2023-01-13 10:20)
Other packages that cited gap R package
View gap citation profile
Other R packages that gap depends,
imports, suggests or enhances
Complete documentation for gap
Functions, R codes and Examples using
the gap R package
Some associated functions: AE3 . BFDP . ESplot . FPRP . KCC . LD22 . LDkl . MCMCgrm . METAL_forestplot . ReadGRM . ReadGRMBin . SNP . WriteGRM . WriteGRMBin . a2g . ab . allele.recode . asplot . b2r . bt . ccsize . chow.test . chr_pos_a1_a2 . ci2ms . circos.cis.vs.trans.plot . circos.cnvplot . circos.mhtplot . circos.mhtplot2 . cis.vs.trans.classification . cnvplot . comp.score . cs . fbsize . g2a . gap . gc.em . gc.lambda . gcontrol . gcontrol2 . gcp . genecounting . geno.recode . get_b_se . get_pve_se . get_sdy . gif . grid2d . h2.jags . h2G . h2GE . h2_mzdz . h2l . hap.control . hap.em . hap . hap.score . hg18 . hg19 . hg38 . hmht.control . htr . hwe.cc . hwe.hardy . hwe.jags . hwe . inv_chr_pos_a1_a2 . invnormal . ixy . kin.morgan . klem . labelManhattan . log10p . log10pvalue . logp . makeped . masize . metap . metareg . mht.control . mhtplot . mhtplot.trunc . mhtplot2 . mia . miamiplot . miamiplot2 . mr . mr_forestplot . mtdt . mtdt2 . muvar . mvmeta . pbsize . pbsize2 . pedtodot . pedtodot_verbatim . pfc . pfc.sim . pgc . plot.hap.score . print.hap.score . pvalue . qqfun . qqunif . qtl2dplot . qtl2dplotly . qtl3dplotly . qtlClassifier . read.ms.output . revStrand . runshinygap . s2k . sentinels . snptest_sample . tscc . whscore . xy .
Some associated R codes: 2ld.R . AE3.R . BFDP.R . ESplot.R . FPRP.R . KCC.R . MCMCgrm.R . METAL_forestplot.R . SNP.R . ab.R . asplot.R . b2r.R . bt.R . ccsize.R . chow.test.R . chrs.R . circos.cis.vs.trans.plot.R . circos.cnvplot.R . circos.mhtplot.R . circos.mhtplot2.R . cis.vs.trans.classification.R . cnvplot.R . comp.score.R . cs.R . fbsize.R . gap-internal.R . gap.R . gc.em.R . gc.lambda.R . gcontrol.R . gcontrol2.R . gcp.R . genecounting.R . get_b_se.R . get_pve_se.R . get_sdy.R . gif.R . h2.jags.R . h2G.R . h2GE.R . h2_mzdz.R . h2l.R . hap.R . hap.control.R . hap.em.R . hap.score.R . hapfun.R . htr.R . hwe.R . hwe.cc.R . hwe.hardy.R . hwe.jags.R . invnormal.R . kin.morgan.R . labelManhattan.R . log10p.R . log10pvalue.R . logp.R . makeRLEplots.R . makeped.R . masize.R . metap.R . metareg.R . mhtplot.R . mhtplot.trunc.R . mhtplot2.R . mia.R . miamiplot.R . miamiplot2.R . mr.R . mr_forestplot.R . mtdt.R . mtdt2.R . muvar.R . mvmeta.R . onload.R . pbsize.R . pbsize2.R . pedtodot.R . pedtodot_verbatim.R . pfc.R . pfc.sim.R . pgc.R . pvalue.R . qqfun.R . qqunif.R . qtl2dplot.R . qtl2dplotly.R . qtl3dplotly.R . qtlClassifier.R . read.ms.output.R . revStrand.R . runshinygap.R . s2k.R . sentinels.R . snpid.R . snptest_sample.R . tscc.R . utils.R . whscore.R . Full gap package functions and examples
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