Other packages > Find by keyword >

simfam  

Simulate and Model Family Pedigrees with Structured Founders
View on CRAN: Click here


Download and install simfam package within the R console
Install from CRAN:
install.packages("simfam")

Install from Github:
library("remotes")
install_github("cran/simfam")

Install by package version:
library("remotes")
install_version("simfam", "1.1.6")



Attach the package and use:
library("simfam")
Maintained by
Alejandro Ochoa
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-09-02
Latest Update: 2023-01-09
Description:
The focus is on simulating and modeling families with founders drawn from a structured population (for example, with different ancestries or other potentially non-family relatedness), in contrast to traditional pedigree analysis that treats all founders as equally unrelated.Main function simulates a random pedigree for many generations, avoiding close relatives, pairing closest individuals according to a 1D geography and their randomly-drawn sex, and with variable children sizes to result in a target population size per generation.Auxiliary functions calculate kinship matrices, admixture matrices, and draw random genotypes across arbitrary pedigree structures starting from the corresponding founder values.The code is built around the plink FAM table format for pedigrees.Described in Yao and Ochoa (2022) <doi:10.1101/2022.03.25.485885>.
How to cite:
Alejandro Ochoa (2021). simfam: Simulate and Model Family Pedigrees with Structured Founders. R package version 1.1.6, https://cran.r-project.org/web/packages/simfam. Accessed 07 Nov. 2024.
Previous versions and publish date:
1.0.2 (2021-09-02 11:20), 1.0.3 (2021-10-06 01:20)
Other packages that cited simfam R package
View simfam citation profile
Other R packages that simfam depends, imports, suggests or enhances
Complete documentation for simfam
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

robregcc  
Robust Regression with Compositional Covariates
We implement the algorithm estimating the parameters of the robust regression model with composition ...
Download / Learn more Package Citations See dependency  
con2aqi  
Calculate the AQI from Pollutant Concentration
To calculate the AQI (Air Quality Index) from pollutant concentration data. O3, PM2.5, PM10, CO, SO ...
Download / Learn more Package Citations See dependency  
bacondecomp  
Goodman-Bacon Decomposition
Decomposition for differences-in-differences with variation in treatment timing from Goodman-Bacon ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

23,092

R Packages

198,677

Dependencies

62,675

Author Associations

23,089

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA