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fitode
View on CRAN: Click
here
Download and install fitode package within the R console
Install from CRAN:
install.packages("fitode")
Install from Github:
library("remotes")
install_github("cran/fitode")
Install by package version:
library("remotes")
install_version("fitode", "0.1.1")
Attach the package and use:
library("fitode")
Maintained by
Sang Woo Park
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-10-29
Latest Update: 2022-10-29
Description:
Methods and functions for fitting ordinary differential equations (ODE) model in 'R'. Sensitivity equations are used to compute the gradients of ODE trajectories with respect to underlying parameters, which in turn allows for more stable fitting. Other fitting methods, such as MCMC (Markov chain Monte Carlo), are also available.
How to cite:
Sang Woo Park (2022). fitode: Tools for Ordinary Differential Equations Model Fitting. R package version 0.1.1, https://cran.r-project.org/web/packages/fitode. Accessed 01 May. 2025.
Previous versions and publish date:
No previous versions
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Other R packages that fitode depends,
imports, suggests or enhances
Complete documentation for fitode
Functions, R codes and Examples using
the fitode R package
Some associated functions: Eval-loglik.ode-method . Eval . SierraLeone2014 . Transform-loglik.ode-method . Transform-odemodel-method . Transform-prior.ode-method . Transform . apply_link . blowfly . check_link . coef-fitode-method . coef-fitodeMCMC-method . confint-fitode-method . confint-fitodeMCMC-method . dfun . dfun2 . fitode-class . fitode . fitodeMCMC-class . fitodeMCMC . fixpar . grad-loglik.ode-method . grad-odemodel-method . grad . hessian . initialize-loglik.ode-method . initialize-odemodel-method . initialize-prior.ode-method . initialize-solution.ode-method . jacobian-odemodel-method . jacobian . logLik-fitode-method . logLik.sensitivity . loglik.ode-class . make_prior . ode.sensitivity . ode.solve . odemodel-class . plot-fitode-missing-method . plot-fitodeMCMC-missing-method . plot_internal . predict-fitode-method . predict-fitodeMCMC-method . prior.ode-class . profile-fitode-method . select_model . select_prior . set_link . show-fitode-method . show-fitodeMCMC-method . show-odemodel-method . simulate-fitode-method . simulate-odemodel-method . simulate_internal . solution.de-class . stdEr-fitode-method . stdEr-fitodeMCMC-method . summary-fitode-method . summary-fitodeMCMC-method . tumorgrowth . update-fitode-method . update-fitodeMCMC-method . vcov-fitode-method . vcov-fitodeMCMC-method .
Some associated R codes: data.R . fitode-class.R . fitode-methods.R . fitode.R . fitodeMCMC-methods.R . fitodeMCMC.R . generic.R . loglik.R . model.R . plot.R . prior.R . simulate.R . solution.R . transform.R . update.R . utilities.R . wmvrnorm.R . zzz.R . Full fitode package functions and examples
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