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epimdr2
View on CRAN: Click
here
Download and install epimdr2 package within the R console
Install from CRAN:
install.packages("epimdr2")
Install from Github:
library("remotes")
install_github("cran/epimdr2") Install by package version:
library("remotes")
install_version("epimdr2", "1.1-1") Attach the package and use:
library("epimdr2")
Maintained by
Ottar N. Bjornstad
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-14
Latest Update:
Description:
Functions, data sets and shiny apps for "Epidemics: Models and Data in R (2nd edition)" by Ottar N. Bjornstad (2022, ISBN: 978-3-031-12055-8) . The package contains functions to study the Susceptible-Exposed-Infected-Removed SEIR model, spatial and age-structured Susceptible-Infected-Removed SIR models; time-series SIR and chain-binomial stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models for social spread of infection. The package is also an advanced quantitative companion to the 'Coursera' Epidemics Massive Online Open Course .
How to cite:
Ottar N. Bjornstad (2022). epimdr2: Functions and Data for "Epidemics: Models and Data in R (2nd Edition)". R package version 1.1-1, https://cran.r-project.org/web/packages/epimdr2. Accessed 04 Jun. 2026.
Previous versions and publish date:
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Other R packages that epimdr2 depends,
imports, suggests or enhances
Complete documentation for epimdr2
Functions, R codes and Examples using
the epimdr2 R package
Some associated functions: barabasiAlbert . black . burnett . ccs . chabaudi . cholera . coyne . coyne2 . cspring . dalziel . ebola . euthamia . ferrari . filipendula . fiv . flu . gillespie . gonnet . gravity . gypsymoth . icelandflu . integrandpc . jacobian . leslie . litter . llik.cb . llik.pc . m4494 . magono . may.app . meas . nbmod . nbspat.app . nextgenR0 . niamey . niamey_daily . orv.app . pagiard . paili . palymes . pameasle . pdv . pertcop . peru . plot.cm . plot.netSir . polymod . r0fun . rabbit . rabies . retrospec . ringlattice . ross.app . seir.app . seirmod . seirmod2 . seirs.app . silene . sim.cb . sir.app . sirAgemod . sirChainmod . sirNetmod . sirSpatmod . sirmod . sirvmod . sirwmod . summary.cm . summary.netSir . tau . tsir.app . tsirLlyap . tsirLyap . tsirSim . tsirSim2 . tsirSpat . twostrain.app . twostrain . tydiphtheria . tymeasles . tyscarlet . tywhooping . us . usflu . variants . waller . wattsStrogatz .
Some associated R codes: coyne2.R . data.R . jacobian.R . leslie.R . network.R . nextgenR0.R . rfuncs.R . shinypara.R . shinyseir.R . shinyseirs.R . shinysir.R . sir.R . spatsir.R . tsir.R . Full epimdr2 package functions and examples
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