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eicm  

Explicit Interaction Community Models
View on CRAN: Click here


Download and install eicm package within the R console
Install from CRAN:
install.packages("eicm")

Install from Github:
library("remotes")
install_github("cran/eicm")

Install by package version:
library("remotes")
install_version("eicm", "1.0.3")



Attach the package and use:
library("eicm")
Maintained by
Miguel Porto
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-26
Latest Update: 2023-05-05
Description:
Model fitting and species biotic interaction network topology selection for explicit interaction community models. Explicit interaction community models are an extension of binomial linear models for joint modelling of species communities, that incorporate both the effects of species biotic interactions and the effects of missing covariates. Species interactions are modelled as direct effects of each species on each of the others, and are estimated alongside the effects of missing covariates, modelled as latent factors. The package includes a penalized maximum likelihood fitting function, and a genetic algorithm for selecting the most parsimonious species interaction network topology.
How to cite:
Miguel Porto (2020). eicm: Explicit Interaction Community Models. R package version 1.0.3, https://cran.r-project.org/web/packages/eicm. Accessed 29 Jan. 2025.
Previous versions and publish date:
1.0.0 (2020-03-26 16:50), 1.0.1 (2020-10-20 09:00)
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