Other packages > Find by keyword >

eicm  

Explicit Interaction Community Models
View on CRAN: Click here


Download and install eicm package within the R console
Install from CRAN:
install.packages("eicm")

Install from Github:
library("remotes")
install_github("cran/eicm")

Install by package version:
library("remotes")
install_version("eicm", "1.0.3")



Attach the package and use:
library("eicm")
Maintained by
Miguel Porto
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-26
Latest Update: 2023-05-05
Description:
Model fitting and species biotic interaction network topology selection for explicit interaction community models. Explicit interaction community models are an extension of binomial linear models for joint modelling of species communities, that incorporate both the effects of species biotic interactions and the effects of missing covariates. Species interactions are modelled as direct effects of each species on each of the others, and are estimated alongside the effects of missing covariates, modelled as latent factors. The package includes a penalized maximum likelihood fitting function, and a genetic algorithm for selecting the most parsimonious species interaction network topology.
How to cite:
Miguel Porto (2020). eicm: Explicit Interaction Community Models. R package version 1.0.3, https://cran.r-project.org/web/packages/eicm. Accessed 26 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:35), 1.0.0 (2020-03-26 16:50), 1.0.1 (2020-10-20 09:00)
Other packages that cited eicm R package
View eicm citation profile
Other R packages that eicm depends, imports, suggests or enhances
Complete documentation for eicm
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

rts2  
Log-Gaussian Cox Process Models with Approximations
Supports modelling real-time case data to facilitate the real-time surveillance of infectious disea ...
Download / Learn more Package Citations See dependency  
MARSS  
Multivariate Autoregressive State-Space Modeling
The MARSS package provides maximum-likelihood parameter estimation for constrained and unconstraine ...
Download / Learn more Package Citations See dependency  
SADEG  
Stability Analysis in Differentially Expressed Genes
We analyzed the nucleotide composition of genes with a special emphasis on stability of DNA sequence ...
Download / Learn more Package Citations See dependency  
LSDsensitivity  
Sensitivity Analysis Tools for 'LSD' Simulations
Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA