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edmcr
View on CRAN: Click
here
Download and install edmcr package within the R console
Install from CRAN:
install.packages("edmcr")
Install from Github:
library("remotes")
install_github("cran/edmcr")
Install by package version:
library("remotes")
install_version("edmcr", "0.2.0")
Attach the package and use:
library("edmcr")
Maintained by
R. Wayne Oldford
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
First Published: 2017-09-21
Latest Update: 2021-09-10
Description:
Implements various general algorithms to estimate missing elements
of a Euclidean (squared) distance matrix.
Includes optimization methods based on semi-definite programming found in
Alfakih, Khadani, and Wolkowicz (1999),
a non-convex position formulation by Fang and O'Leary (2012), and
a dissimilarity parameterization formulation by Trosset (2000).
When the only non-missing
distances are those on the minimal spanning tree, the guided random search
algorithm will complete the matrix while preserving the minimal spanning tree following
Rahman and Oldford (2018).
Point configurations in specified dimensions can be determined from the completions.
Special problems such as the sensor localization problem,
as for example in Krislock and Wolkowicz (2010),
as well as reconstructing
the geometry of a molecular structure, as for example in
Hendrickson (1995), can also be solved.
These and other methods are described in the thesis of Adam Rahman(2018).
How to cite:
R. Wayne Oldford (2017). edmcr: Euclidean Distance Matrix Completion Tools. R package version 0.2.0, https://cran.r-project.org/web/packages/edmcr. Accessed 11 Apr. 2025.
Other packages that cited edmcr R package
View edmcr citation profile
Other R packages that edmcr depends,
imports, suggests or enhances
Complete documentation for edmcr
Functions, R codes and Examples using
the edmcr R package
Some associated functions: A . colamdR . dpf . edm2gram . edm2psd . edmc . getConfig . gram2edm . grs . mst . mstLB . mstUB . npf . primPath . psd2edm . rgrs . sdp . snl . sprosr . sprosr_aco . sprosr_seq . sprosr_upl .
Some associated R codes: InputReaders.R . MatrixOperators.R . ang_dist_conmaker.R . ang_sampler.R . atom_nom.R . buildMatrix.R . colamdR.R . datadoc.R . dpf.R . dpfGr.R . dpfHelpers.R . edmc.R . generate_protein.R . generate_protein_helpers.R . getConfig.R . getStringy.R . grs.R . load_data.R . make_bounds.R . mst.R . mstLB.R . mstUB.R . npf.R . npfConfigInit.R . npfCreateF.R . npfDimRelax.R . npfGr.R . npfHessian.R . npfLocalMin.R . npfNLP.R . npffAH.R . post_processing.R . primPath.R . protchecker.R . protcheckerHelpers.R . reducer.R . reducer_helpers.R . rgrs.R . rgrsCheckMST.R . rgrsNewPoint.R . sdp.R . sdpHelpers.R . sdpNormest.R . sdpQLS.R . snl.R . snlCompleteClique.R . snlGrowCliques.R . snlK.R . snlKdag.R . snlRigidCliqueUnion.R . snlRigidNodeAbsorption.R . snlSubspaceIntersection.R . snlsMat.R . snlsvec.R . solve_sdpt3.R . sprosr.R . Full edmcr package functions and examples
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