Other packages > Find by keyword >

easyDifferentialGeneCoexpression  

Easily Performs Differential Coexpression Analysis
View on CRAN: Click here


Download and install easyDifferentialGeneCoexpression package within the R console
Install from CRAN:
install.packages("easyDifferentialGeneCoexpression")

Install from Github:
library("remotes")
install_github("cran/easyDifferentialGeneCoexpression")

Install by package version:
library("remotes")
install_version("easyDifferentialGeneCoexpression", "1.4")



Attach the package and use:
library("easyDifferentialGeneCoexpression")
Maintained by
Davide Chicco
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-12-02
Latest Update:
Description:
A function that reads in the GEO code of a list of probesets or gene symbols, a gene expression dataset GEO accession code, the name of the dataset feature discriminating the two conditions for the differential coexpression, and the values of the two different conditions for the differential coexpression, and returns the significant pairs of genes/probesets with highest differential coexpression (p-value < 0.005). If the input gene list is made of gene symbols, this package associates the probesets to these gene symbols, if found. Platforms available: GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL .
How to cite:
Davide Chicco (2021). easyDifferentialGeneCoexpression: Easily Performs Differential Coexpression Analysis. R package version 1.4, https://cran.r-project.org/web/packages/easyDifferentialGeneCoexpression. Accessed 05 Jun. 2026.
Previous versions and publish date:
0.7 (2021-12-02 09:30), 0.8 (2021-12-03 23:50), 0.9 (2021-12-09 00:00), 1.0 (2022-02-16 21:20), 1.4 (2024-02-05 12:40)
Other packages that cited easyDifferentialGeneCoexpression R package
View easyDifferentialGeneCoexpression citation profile
Other R packages that easyDifferentialGeneCoexpression depends, imports, suggests or enhances
Complete documentation for easyDifferentialGeneCoexpression
Functions, R codes and Examples using the easyDifferentialGeneCoexpression R package
Some associated functions: easyDifferentialGeneCoexpression . fromProbesetToGeneSymbol . geoDataDownload . geoPlatformAnnotationsDownload . probesetRetrieval . 
Some associated R codes: Full easyDifferentialGeneCoexpression package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA