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easyDifferentialGeneCoexpression  

Easily Performs Differential Coexpression Analysis
View on CRAN: Click here


Download and install easyDifferentialGeneCoexpression package within the R console
Install from CRAN:
install.packages("easyDifferentialGeneCoexpression")

Install from Github:
library("remotes")
install_github("cran/easyDifferentialGeneCoexpression")

Install by package version:
library("remotes")
install_version("easyDifferentialGeneCoexpression", "1.4")



Attach the package and use:
library("easyDifferentialGeneCoexpression")
Maintained by
Davide Chicco
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-12-02
Latest Update: 2022-02-16
Description:
A function that reads in the GEO code of a list of probesets or gene symbols, a gene expression dataset GEO accession code, the name of the dataset feature discriminating the two conditions for the differential coexpression, and the values of the two different conditions for the differential coexpression, and returns the significant pairs of genes/probesets with highest differential coexpression (p-value < 0.005). If the input gene list is made of gene symbols, this package associates the probesets to these gene symbols, if found. Platforms available: GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL .
How to cite:
Davide Chicco (2021). easyDifferentialGeneCoexpression: Easily Performs Differential Coexpression Analysis. R package version 1.4, https://cran.r-project.org/web/packages/easyDifferentialGeneCoexpression. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.7 (2021-12-02 09:30), 0.8 (2021-12-03 23:50), 0.9 (2021-12-09 00:00), 1.0 (2022-02-16 21:20)
Other packages that cited easyDifferentialGeneCoexpression R package
View easyDifferentialGeneCoexpression citation profile
Other R packages that easyDifferentialGeneCoexpression depends, imports, suggests or enhances
Complete documentation for easyDifferentialGeneCoexpression
Functions, R codes and Examples using the easyDifferentialGeneCoexpression R package
Some associated functions: easyDifferentialGeneCoexpression . fromProbesetToGeneSymbol . geoDataDownload . geoPlatformAnnotationsDownload . probesetRetrieval . 
Some associated R codes: Full easyDifferentialGeneCoexpression package functions and examples
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