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dynwrap  

Representing and Inferring Single-Cell Trajectories
View on CRAN: Click here


Download and install dynwrap package within the R console
Install from CRAN:
install.packages("dynwrap")

Install from Github:
library("remotes")
install_github("cran/dynwrap")

Install by package version:
library("remotes")
install_version("dynwrap", "1.2.4")



Attach the package and use:
library("dynwrap")
Maintained by
Robrecht Cannoodt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-11
Latest Update: 2023-07-19
Description:
Provides functionality to infer trajectories from single-cell data, represent them into a common format, and adapt them. Other biological information can also be added, such as cellular grouping, RNA velocity and annotation. Saelens et al. (2019) .
How to cite:
Robrecht Cannoodt (2019). dynwrap: Representing and Inferring Single-Cell Trajectories. R package version 1.2.4, https://cran.r-project.org/web/packages/dynwrap. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.1.4 (2019-10-11 12:40), 1.2.0 (2020-03-09 16:10), 1.2.1 (2020-05-14 12:30), 1.2.2 (2021-03-23 23:40), 1.2.3 (2023-03-01 18:10)
Other packages that cited dynwrap R package
View dynwrap citation profile
Other R packages that dynwrap depends, imports, suggests or enhances
Complete documentation for dynwrap
Functions, R codes and Examples using the dynwrap R package
Some associated functions: add_attraction . add_branch_trajectory . add_cell_graph . add_cell_waypoints . add_cluster_graph . add_cyclic_trajectory . add_dimred . add_dimred_projection . add_end_state_probabilities . add_expression . add_feature_importance . add_grouping . add_linear_trajectory . add_prior_information . add_pseudotime . add_regulatory_network . add_root . add_tde_overall . add_timings . add_trajectory . add_waypoints . allowed_inputs . allowed_outputs . calculate_attraction . calculate_average . calculate_geodesic_distances . calculate_trajectory_dimred . classify_milestone_network . common_param . convert_definition . convert_milestone_percentages_to_progressions . convert_progressions_to_milestone_percentages . create_ti_method_container . create_ti_method_definition . create_ti_method_r . def_author . def_container . def_manuscript . def_method . def_package . def_parameters . def_wrapper . definition . dot-method_process_definition . dynwrap . example_dataset . example_trajectory . flip_edges . gather_cells_at_milestones . generate_parameter_documentation . get_default_parameters . get_ti_methods . group_from_trajectory . infer_trajectories . label_milestones . prior_usages . priors . project_trajectory . project_waypoints . random_seed . reexports . simplify_igraph_network . simplify_trajectory . trajectory_type_dag . trajectory_types . wrap_data . wrap_expression . wrapper_types . 
Some associated R codes: adapt_orient_topology.R . add_regulatory_network.R . calculate_average.R . calculate_geodesic_distances.R . calculate_trajectory_dimred.R . classify_milestone_network.R . container_get.R . convert_milestone_percentages_to_progressions.R . convert_progressions_to_milestone_percentages.R . data.R . method_create_ti_method_container.R . method_create_ti_method_definition.R . method_create_ti_method_r.R . method_execute.R . method_extract_args.R . method_get_ti_methods.R . method_infer_trajectory.R . method_process_definition.R . package.R . project_waypoints.R . reexport.R . simplify_igraph_network.R . simplify_trajectory.R . wrap_add_attraction.R . wrap_add_branch_trajectory.R . wrap_add_cell_graph.R . wrap_add_cell_waypoints.R . wrap_add_cluster_graph.R . wrap_add_cyclic_trajectory.R . wrap_add_dimred.R . wrap_add_dimred_projection.R . wrap_add_end_state_probabilities.R . wrap_add_expression.R . wrap_add_feature_importance.R . wrap_add_grouping.R . wrap_add_linear_trajectory.R . wrap_add_prior_information.R . wrap_add_pseudotime.R . wrap_add_root.R . wrap_add_tde_overall.R . wrap_add_timings.R . wrap_add_trajectory.R . wrap_add_waypoints.R . wrap_data.R . wrap_gather_cells_at_milestones.R . wrap_label_milestones.R .  Full dynwrap package functions and examples
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