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bdc  

Biodiversity Data Cleaning
View on CRAN: Click here


Download and install bdc package within the R console
Install from CRAN:
install.packages("bdc")

Install from Github:
library("remotes")
install_github("cran/bdc")

Install by package version:
library("remotes")
install_version("bdc", "1.1.6")



Attach the package and use:
library("bdc")
Maintained by
Bruno Ribeiro
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-03-01
Latest Update: 2024-12-17
Description:
It brings together several aspects of biodiversity data-cleaning in one place. 'bdc' is organized in thematic modules related to different biodiversity dimensions, including 1) Merge datasets: standardization and integration of different datasets; 2) Pre-filter: flagging and removal of invalid or non-interpretable information, followed by data amendments; 3) Taxonomy: cleaning, parsing, and harmonization of scientific names from several taxonomic groups against taxonomic databases locally stored through the application of exact and partial matching algorithms; 4) Space: flagging of erroneous, suspect, and low-precision geographic coordinates; and 5) Time: flagging and, whenever possible, correction of inconsistent collection date. In addition, it contains features to visualize, document, and report data quality
How to cite:
Bruno Ribeiro (2022). bdc: Biodiversity Data Cleaning. R package version 1.1.6, https://cran.r-project.org/web/packages/bdc. Accessed 04 Jun. 2026.
Previous versions and publish date:
1.0.0 (2022-03-01 10:00), 1.1.0 (2022-04-22 10:30), 1.1.1 (2022-05-27 10:10), 1.1.2 (2022-08-18 09:30), 1.1.4 (2023-03-13 14:50), 1.1.5 (2024-12-17 18:40)
Other packages that cited bdc R package
View bdc citation profile
Other R packages that bdc depends, imports, suggests or enhances
Complete documentation for bdc
Functions, R codes and Examples using the bdc R package
Some associated functions: bdc_basisOfRecords_notStandard . bdc_clean_names . bdc_coordinates_country_inconsistent . bdc_coordinates_empty . bdc_coordinates_from_locality . bdc_coordinates_outOfRange . bdc_coordinates_precision . bdc_coordinates_transposed . bdc_country_from_coordinates . bdc_country_standardized . bdc_create_figures . bdc_create_report . bdc_eventDate_empty . bdc_filter_out_flags . bdc_filter_out_names . bdc_query_names_taxadb . bdc_quickmap . bdc_scientificName_empty . bdc_standardize_datasets . bdc_summary_col . bdc_year_from_eventDate . bdc_year_outOfRange . pipe . 
Some associated R codes: bdc_basisOfRecords_notStandard.R . bdc_clean_duplicates.R . bdc_clean_names.R . bdc_coord_trans.R . bdc_coordinates_country_inconsistent.R . bdc_coordinates_empty.R . bdc_coordinates_from_locality.R . bdc_coordinates_outOfRange.R . bdc_coordinates_precision.R . bdc_coordinates_transposed.R . bdc_correct_coordinates.R . bdc_country_from_coordinates.R . bdc_country_standardized.R . bdc_create_dir.R . bdc_create_figures.R . bdc_create_report.R . bdc_eventDate_empty.R . bdc_extract_cntr_names.R . bdc_filter_name.R . bdc_filter_out_flags.R . bdc_filter_out_names.R . bdc_get_world_map.R . bdc_query_names_taxadb.R . bdc_quickmap.R . bdc_return_names.R . bdc_scientificName_empty.R . bdc_standardize_country.R . bdc_standardize_datasets.R . bdc_stdz_cntr.R . bdc_suggest_names_taxadb.R . bdc_summary_col.R . bdc_year_from_eventDate.R . bdc_year_outOfRange.R . utils-pipe.R . utils.R .  Full bdc package functions and examples
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