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animl  

A Collection of ML Tools for Conservation Research
View on CRAN: Click here


Download and install animl package within the R console
Install from CRAN:
install.packages("animl")

Install from Github:
library("remotes")
install_github("cran/animl")

Install by package version:
library("remotes")
install_version("animl", "2.0.0")



Attach the package and use:
library("animl")
Maintained by
Kyra Swanson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-03-23
Latest Update: 2025-02-11
Description:
Functions required to classify subjects within camera trap field data. The package can handle both images and videos. The authors recommend a two-step approach using Microsoft's 'MegaDector' model and then a second model trained on the classes of interest.
How to cite:
Kyra Swanson (2022). animl: A Collection of ML Tools for Conservation Research. R package version 2.0.0, https://cran.r-project.org/web/packages/animl. Accessed 09 Mar. 2026.
Previous versions and publish date:
1.0.0 (2022-03-23 10:00), 1.1.0 (2023-05-13 07:50), 2.0.0 (2025-02-12 00:10)
Other packages that cited animl R package
View animl citation profile
Other R packages that animl depends, imports, suggests or enhances
Complete documentation for animl
Functions, R codes and Examples using the animl R package
Some associated functions: ImageGenerator . ImageGeneratorSize . animl . applyPredictions . bestGuess . buildFileManifest . checkFile . classifyImageMD . classifyImagesBatchMD . classifySequence . classifyVideo . convertCoordinates . convertMDResultsSimple . convertMDresults . cropImageGenerator . cropImageTrainGenerator . decode_img_full . decode_img_resize . detectObject . detectObjectBatch . extractAllBoxes . extractAllBoxesFromFlat . extractBoxes . extractBoxesFromFlat . extractBoxesFromMD . extractFiles . getAnimals . getEmpty . imageAugmentationColor . imageAugmentationGeometry . imageLabel . imageLabelCrop . imagesFromVideos . loadData . loadImage . loadImageResize . loadImageResizeCrop . loadImageResizeSize . loadMDModel . multispecies . parseMD . parseMDjson . parseMDsimple . pipe . plotBoxes . plotBoxesFromFlat . predictSpecies . processYOLO5 . resizePad . resize_pad . saveData . sequenceClassification . setupDirectory . symUnlink . symlinkMD . symlinkSpecies . testMD . updateResults . 
Some associated R codes: applyPredictions.R . bestGuess.R . checkMD.R . classifyMD.R . classifySequence.R . classifySpecies.R . convertCoordinates.R . convertMDresults.R . dataManagement.R . decodeImage.R . detectMD.R . extractBoxes.R . extractFiles.R . fileManagement.R . generateCrops.R . generators.R . imagesFromVideos.R . loadMDmodel.R . multispecies.R . parseMD.R . parseMDjson.R . pipeline.R . plotBoxes.R . predictSpecies.R . resize_pad.R . sequenceClassification.R . setupDirectory.R . splitData.R . symlink.R . testMD.R . updateResults.R . utils-pipe.R .  Full animl package functions and examples
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