Other packages > Find by keyword >

alleHap  

Allele Imputation and Haplotype Reconstruction from Pedigree Databases
View on CRAN: Click here


Download and install alleHap package within the R console
Install from CRAN:
install.packages("alleHap")

Install from Github:
library("remotes")
install_github("cran/alleHap")

Install by package version:
library("remotes")
install_version("alleHap", "0.9.9")



Attach the package and use:
library("alleHap")
Maintained by
Nathan Medina-Rodriguez
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-08-10
Latest Update: 2017-08-19
Description:
Tools to simulate alphanumeric alleles, impute genetic missing data and reconstruct non-recombinant haplotypes from pedigree databases in a deterministic way. Allelic simulations can be implemented taking into account many factors (such as number of families, markers, alleles per marker, probability and proportion of missing genotypes, recombination rate, etc). Genotype imputation can be used with simulated datasets or real databases (previously loaded in .ped format). Haplotype reconstruction can be carried out even with missing data, since the program firstly imputes each family genotype (without a reference panel), to later reconstruct the corresponding haplotypes for each family member. All this considering that each individual (due to meiosis) should unequivocally have two alleles per marker (one inherited from each parent) and thus imputation and reconstruction results can be deterministically calculated.
How to cite:
Nathan Medina-Rodriguez (2014). alleHap: Allele Imputation and Haplotype Reconstruction from Pedigree Databases. R package version 0.9.9, https://cran.r-project.org/web/packages/alleHap. Accessed 15 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:17), 0.7.2 (2014-08-10 17:40), 0.9.2 (2015-10-05 23:13), 0.9.7 (2016-07-17 14:50)
Other packages that cited alleHap R package
View alleHap citation profile
Other R packages that alleHap depends, imports, suggests or enhances
Complete documentation for alleHap
Functions, R codes and Examples using the alleHap R package
Some associated functions: alleHap-package . alleHaplotyper . alleImputer . alleLoader . alleSimulator . 
Some associated R codes: alleHaplotyper.R . alleImputer.R . alleLoader.R . alleSimulator.R .  Full alleHap package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gamlss.add  
Extra Additive Terms for Generalized Additive Models for Location Scale and Shape
Interface for extra smooth functions including tensor products, neural networks and decision trees. ...
Download / Learn more Package Citations See dependency  
SECFISH  
Disaggregate Variable Costs
These functions were developed within SECFISH project (Strengthening regional cooperation in the are ...
Download / Learn more Package Citations See dependency  
gscaLCA  
Generalized Structure Component Analysis- Latent Class Analysis & Latent Class Regression
Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structu ...
Download / Learn more Package Citations See dependency  
footBayes  
Fitting Bayesian and MLE Football Models
This is the first package allowing for the estimation, visualization and prediction of the most wel ...
Download / Learn more Package Citations See dependency  
binhf  
Haar-Fisz Functions for Binomial Data
Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009). ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA