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Umatrix
View on CRAN: Click
here
Download and install Umatrix package within the R console
Install from CRAN:
install.packages("Umatrix")
Install from Github:
library("remotes")
install_github("cran/Umatrix") Install by package version:
library("remotes")
install_version("Umatrix", "4.0.2") Attach the package and use:
library("Umatrix")
Maintained by
Jorn Lotsch
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-12-12
Latest Update: 2025-05-28
Description:
By gaining the property of emergence through self-organization, the enhancement of SOMs(self organizing maps) is called Emergent SOM (ESOM). The result of the projection by ESOM is a grid of neurons which can be visualised as a three dimensional landscape in form of the Umatrix. Further details can be found in the referenced publications (see url). This package offers tools for calculating and visualising the ESOM as well as Umatrix, Pmatrix and UStarMatrix. All the functionality is also available through graphical user interfaces implemented in 'shiny'.
How to cite:
Jorn Lotsch (2017). Umatrix: Visualization of Structures in High-Dimensional Data. R package version 4.0.2, https://cran.r-project.org/web/packages/Umatrix. Accessed 04 Jun. 2026.
Previous versions and publish date:
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Complete documentation for Umatrix
Functions, R codes and Examples using
the Umatrix R package
Some associated functions: Hepta . Umatrix-package . esomTrain . iClassification . iEsomTrain . iUmapIsland . iUstarmatrix . plotMatrix . pmatrixForEsom . showMatrix3D . umatrixForEsom . ustarmatrixCalc .
Some associated R codes: CheckBestmatches.R . CheckImx.R . CheckUmatrix.R . DefaultColorSequence.R . EsomNeuronsAsList.R . ListAsEsomNeurons.R . RcppExports.R . ToroidUmatrix.R . UmatrixProportions.R . UmxBmuFromIsland.R . bestUmatrixTranslation.R . checkUmatrixIntegrity.R . coolDownLeadInLeadOut.R . coolDownLinear.R . createMaskFromPolygon.R . drawPoliticalMap.R . esomInit.R . esomProjection.R . esomTrain.R . esomTrainOnline.R . esomTrainStep.R . gridNeighbourhoodPattern.R . iClassification.R . iEsomTrain.R . iUmapIsland.R . iUstarmatrix.R . neighbourhoodThroughPattern.R . plotMatrix.R . pmatrixForEsom.R . shiftedNeurons.R . shiftedUmatrix.R . showMatrix3D.R . umatrixForEsom.R . upscaleUmatrix.R . ustarmatrixCalc.R . xBayesDecisionBoundaries.R . xDelaunay4BestMatches.R . xDelaunayGraphMatrix.R . xTileBM.R . xgplot.R . xuniquePoints.R . xzeros.R . Full Umatrix package functions and examples
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