Other packages > Find by keyword >

SparseDC  

Implementation of SparseDC Algorithm
View on CRAN: Click here


Download and install SparseDC package within the R console
Install from CRAN:
install.packages("SparseDC")

Install from Github:
library("remotes")
install_github("cran/SparseDC")

Install by package version:
library("remotes")
install_version("SparseDC", "0.1.17")



Attach the package and use:
library("SparseDC")
Maintained by
Jun Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-02
Latest Update: 2018-01-04
Description:
Implements the algorithm described in Barron, M., Zhang, S. and Li, J. 2017, "A sparse differential clustering algorithm for tracing cell type changes via single-cell RNA-sequencing data", Nucleic Acids Research, gkx1113, <doi:10.1093/nar/gkx1113>. This algorithm clusters samples from two different populations, links the clusters across the conditions and identifies marker genes for these changes. The package was designed for scRNA-Seq data but is also applicable to many other data types, just replace cells with samples and genes with variables. The package also contains functions for estimating the parameters for SparseDC as outlined in the paper. We recommend that users further select their marker genes using the magnitude of the cluster centers.
How to cite:
Jun Li (2017). SparseDC: Implementation of SparseDC Algorithm. R package version 0.1.17, https://cran.r-project.org/web/packages/SparseDC. Accessed 07 Nov. 2024.
Previous versions and publish date:
0.1.5 (2017-05-02 12:50), 0.1.12 (2017-09-17 18:16), 0.1.14 (2017-10-19 05:37)
Other packages that cited SparseDC R package
View SparseDC citation profile
Other R packages that SparseDC depends, imports, suggests or enhances
Complete documentation for SparseDC
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
robregcc  
Robust Regression with Compositional Covariates
We implement the algorithm estimating the parameters of the robust regression model with composition ...
Download / Learn more Package Citations See dependency  
bacondecomp  
Goodman-Bacon Decomposition
Decomposition for differences-in-differences with variation in treatment timing from Goodman-Bacon ...
Download / Learn more Package Citations See dependency  
con2aqi  
Calculate the AQI from Pollutant Concentration
To calculate the AQI (Air Quality Index) from pollutant concentration data. O3, PM2.5, PM10, CO, SO ...
Download / Learn more Package Citations See dependency  

23,092

R Packages

198,677

Dependencies

62,675

Author Associations

23,089

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA