Other packages > Find by keyword >

SparseDC  

Implementation of SparseDC Algorithm
View on CRAN: Click here


Download and install SparseDC package within the R console
Install from CRAN:
install.packages("SparseDC")

Install from Github:
library("remotes")
install_github("cran/SparseDC")

Install by package version:
library("remotes")
install_version("SparseDC", "0.1.17")



Attach the package and use:
library("SparseDC")
Maintained by
Jun Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-05-02
Latest Update: 2018-01-04
Description:
Implements the algorithm described in Barron, M., Zhang, S. and Li, J. 2017, "A sparse differential clustering algorithm for tracing cell type changes via single-cell RNA-sequencing data", Nucleic Acids Research, gkx1113, <doi:10.1093/nar/gkx1113>. This algorithm clusters samples from two different populations, links the clusters across the conditions and identifies marker genes for these changes. The package was designed for scRNA-Seq data but is also applicable to many other data types, just replace cells with samples and genes with variables. The package also contains functions for estimating the parameters for SparseDC as outlined in the paper. We recommend that users further select their marker genes using the magnitude of the cluster centers.
How to cite:
Jun Li (2017). SparseDC: Implementation of SparseDC Algorithm. R package version 0.1.17, https://cran.r-project.org/web/packages/SparseDC. Accessed 06 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:26), 0.1.5 (2017-05-02 12:50), 0.1.12 (2017-09-17 18:16), 0.1.14 (2017-10-19 05:37)
Other packages that cited SparseDC R package
View SparseDC citation profile
Other R packages that SparseDC depends, imports, suggests or enhances
Complete documentation for SparseDC
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gecko  
Geographical Ecology and Conservation Knowledge Online
Includes a collection of geographical analysis functions aimed primarily at ecology and conservation ...
Download / Learn more Package Citations See dependency  
gRim  
Graphical Interaction Models
Provides the following types of models: Models for contingency tables (i.e. log-linear models) Grap ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA