Other packages > Find by keyword >

SparseDC  

Implementation of SparseDC Algorithm
View on CRAN: Click here


Download and install SparseDC package within the R console
Install from CRAN:
install.packages("SparseDC")

Install from Github:
library("remotes")
install_github("cran/SparseDC")

Install by package version:
library("remotes")
install_version("SparseDC", "0.1.17")



Attach the package and use:
library("SparseDC")
Maintained by
Jun Li
[Scholar Profile | Author Map]
First Published: 2017-05-02
Latest Update: 2018-01-04
Description:
Implements the algorithm described in Barron, M., Zhang, S. and Li, J. 2017, "A sparse differential clustering algorithm for tracing cell type changes via single-cell RNA-sequencing data", Nucleic Acids Research, gkx1113, <doi:10.1093/nar/gkx1113>. This algorithm clusters samples from two different populations, links the clusters across the conditions and identifies marker genes for these changes. The package was designed for scRNA-Seq data but is also applicable to many other data types, just replace cells with samples and genes with variables. The package also contains functions for estimating the parameters for SparseDC as outlined in the paper. We recommend that users further select their marker genes using the magnitude of the cluster centers.
How to cite:
Jun Li (2017). SparseDC: Implementation of SparseDC Algorithm. R package version 0.1.17, https://cran.r-project.org/web/packages/SparseDC. Accessed 10 Apr. 2025.
Previous versions and publish date:
0.1.5 (2017-05-02 12:50), 0.1.12 (2017-09-17 18:16), 0.1.14 (2017-10-19 05:37)
Other packages that cited SparseDC R package
View SparseDC citation profile
Other R packages that SparseDC depends, imports, suggests or enhances
Complete documentation for SparseDC
Downloads during the last 30 days
03/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/09Downloads for SparseDC02468101214TrendBars

Today's Hot Picks in Authors and Packages

webglobe  
3D Interactive Globes
Displays geospatial data on an interactive 3D globe in the web browser. ...
Download / Learn more Package Citations See dependency  
txtq  
A Small Message Queue for Parallel Processes
This queue is a data structure that lets parallel processes send and receive messages, and it can he ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
ecochange  
Integrating Ecosystem Remote Sensing Products to Derive EBV Indicators
Essential Biodiversity Variables (EBV) are state variables with dimensions on time, space, and biolo ...
Download / Learn more Package Citations See dependency  
RODBC  
ODBC Database Access
GRNNs  
General Regression Neural Networks Package
This General Regression Neural Networks Package uses various distance functions. It was motivated b ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

64,867

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA