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SiMRiv  

Simulating Multistate Movements in River/Heterogeneous Landscapes
View on CRAN: Click here


Download and install SiMRiv package within the R console
Install from CRAN:
install.packages("SiMRiv")

Install from Github:
library("remotes")
install_github("cran/SiMRiv")

Install by package version:
library("remotes")
install_version("SiMRiv", "1.0.7")



Attach the package and use:
library("SiMRiv")
Maintained by
Miguel Porto
[Scholar Profile | Author Map]
First Published: 2016-07-12
Latest Update: 2023-01-20
Description:
Provides functions to generate and analyze spatially-explicit individual-based multistate movements in rivers, heterogeneous and homogeneous spaces. This is done by incorporating landscape bias on local behaviour, based on resistance rasters. Although originally conceived and designed to simulate trajectories of species constrained to linear habitats/dendritic ecological networks (e.g. river networks), the simulation algorithm is built to be highly flexible and can be applied to any (aquatic, semi-aquatic or terrestrial) organism, independently on the landscape in which it moves. Thus, the user will be able to use the package to simulate movements either in homogeneous landscapes, heterogeneous landscapes (e.g. semi-aquatic animal moving mainly along rivers but also using the matrix), or even in highly contrasted landscapes (e.g. fish in a river network). The algorithm and its input parameters are the same for all cases, so that results are comparable. Simulated trajectories can then be used as mechanistic null models (Potts & Lewis 2014, <doi:10.1098/rspb.2014.0231>) to test a variety of 'Movement Ecology' hypotheses (Nathan et al. 2008, <doi:10.1073/pnas.0800375105>), including landscape effects (e.g. resources, infrastructures) on animal movement and species site fidelity, or for predictive purposes (e.g. road mortality risk, dispersal/connectivity). The package should be relevant to explore a broad spectrum of ecological phenomena, such as those at the interface of animal behaviour, management, landscape and movement ecology, disease and invasive species spread, and population dynamics.
How to cite:
Miguel Porto (2016). SiMRiv: Simulating Multistate Movements in River/Heterogeneous Landscapes. R package version 1.0.7, https://cran.r-project.org/web/packages/SiMRiv. Accessed 03 Apr. 2025.
Previous versions and publish date:
0.9.1 (2016-07-15 07:50), 0.9 (2016-07-12 13:36), 1.0.0 (2017-07-27 12:53), 1.0.1 (2017-08-17 20:26), 1.0.2 (2017-11-07 15:12), 1.0.3 (2018-01-31 13:30), 1.0.4 (2019-12-19 16:40), 1.0.5 (2023-01-20 18:10), 1.0.6 (2023-09-15 13:42)
Other packages that cited SiMRiv R package
View SiMRiv citation profile
Other R packages that SiMRiv depends, imports, suggests or enhances
Complete documentation for SiMRiv
Functions, R codes and Examples using the SiMRiv R package
Some associated functions: Arith-methods . SiMRiv-package . adjustModel . binCounts . generationPlot . perceptualRange . resistanceFromShape . river . sampleMovement . simulate . species . speciesModel . state . transitionMatrix . 
Some associated R codes: Full SiMRiv package functions and examples
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