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mxnorm
View on CRAN: Click
here
Download and install mxnorm package within the R console
Install from CRAN:
install.packages("mxnorm")
Install from Github:
library("remotes")
install_github("cran/mxnorm") Install by package version:
library("remotes")
install_version("mxnorm", "1.1.0") Attach the package and use:
library("mxnorm")
Maintained by
Coleman Harris
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-02-22
Latest Update: 2023-05-01
Description:
Implements methods to normalize multiplexed imaging data, including
statistical metrics and visualizations to quantify technical variation in
this data type. Reference for methods listed here: Harris, C., Wrobel, J.,
& Vandekar, S. (2022). mxnorm: An R Package to Normalize Multiplexed Imaging
Data. Journal of Open Source Software, 7(71), 4180,
.
How to cite:
Coleman Harris (2022). mxnorm: Apply Normalization Methods to Multiplexed Images. R package version 1.1.0, https://cran.r-project.org/web/packages/mxnorm. Accessed 14 Jun. 2026.
Previous versions and publish date:
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Other R packages that mxnorm depends,
imports, suggests or enhances
Complete documentation for mxnorm
Functions, R codes and Examples using
the mxnorm R package
Some associated functions: mx_dataset . mx_normalize . mx_sample . plot_mx_density . plot_mx_discordance . plot_mx_proportions . plot_mx_umap . print.summary.mx_dataset . run_otsu_discordance . run_reduce_umap . run_var_proportions . summary.mx_dataset .
Some associated R codes: combat_helpers.R . get_discordance_thold.R . get_long_data.R . get_otsu_tab.R . get_umap_data.R . get_umap_reduction.R . get_var_data.R . get_var_proportions.R . global.R . mx_dataset.R . mx_normalize.R . mx_sample.R . new_mx_dataset.R . normalize_mx_combat.R . normalize_mx_dataset.R . normalize_mx_registration.R . otsu_helpers.R . otsu_mx_dataset.R . otsu_mx_discordance.R . plot_mx_density.R . plot_mx_discordance.R . plot_mx_proportions.R . plot_mx_umap.R . registration_helpers.R . run_otsu_discordance.R . run_reduce_umap.R . run_var_proportions.R . summary.R . transform_mx_dataset.R . trim_dataset.R . utils-pipe.R . validate_method_override.R . validate_mx_dataset.R . validate_mx_normalize_params.R . validate_otsu_discordance_params.R . validate_reduce_umap_params.R . validate_threshold_override.R . validate_var_proportions_params.R . Full mxnorm package functions and examples
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