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NPflow  

Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data
View on CRAN: Click here


Download and install NPflow package within the R console
Install from CRAN:
install.packages("NPflow")

Install from Github:
library("remotes")
install_github("cran/NPflow")

Install by package version:
library("remotes")
install_version("NPflow", "0.13.5")



Attach the package and use:
library("NPflow")
Maintained by
Boris P Hejblum
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-04-27
Latest Update: 2024-01-13
Description:
Dirichlet process mixture of multivariate normal, skew normal or skew t-distributions modeling oriented towards flow-cytometry data preprocessing applications. Method is detailed in: Hejblum, Alkhassimn, Gottardo, Caron & Thiebaut (2019) .
How to cite:
Boris P Hejblum (2016). NPflow: Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data. R package version 0.13.5, https://cran.r-project.org/web/packages/NPflow. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.9.0 (2016-04-27 13:30), 0.10.1 (2016-05-03 18:35), 0.12.0 (2017-04-04 17:38), 0.13.1 (2017-08-02 20:42), 0.13.3 (2020-02-06 14:00)
Other packages that cited NPflow R package
View NPflow citation profile
Other R packages that NPflow depends, imports, suggests or enhances
Complete documentation for NPflow
Functions, R codes and Examples using the NPflow R package
Some associated functions: DPMGibbsN . DPMGibbsN_SeqPrior . DPMGibbsN_parallel . DPMGibbsSkewN . DPMGibbsSkewN_parallel . DPMGibbsSkewT . DPMGibbsSkewT_SeqPrior . DPMGibbsSkewT_SeqPrior_parallel . DPMGibbsSkewT_parallel . DPMpost . Flimited . FmeasureC . FmeasureC_no0 . Fmeasure_costC . MAP_sNiW_mmEM . MLE_NiW_mmEM . MLE_gamma . MLE_sNiW . MLE_sNiW_mmEM . NPflow-package . NuMatParC . burn.DPMMclust . cluster_est_Fmeasure . cluster_est_Mbinder_norm . cluster_est_binder . cluster_est_pear . cytoScatter . evalClustLoss . invwishrnd . lgamma_mv . methods.summaryDPMMclust . mmNiWpdf . mmNiWpdfC . mmsNiWlogpdf . mmsNiWpdfC . mmvnpdfC . mmvsnpdfC . mmvstpdfC . mmvtpdfC . mvnlikC . mvnpdf . mvnpdfC . mvsnlikC . mvsnpdf . mvstlikC . mvstpdf . mvtpdf . plot_ConvDPM . plot_DPM . plot_DPMsn . plot_DPMst . postProcess.DPMMclust . priormix . rCRP . rNNiW . rNiW . sampleClassC . sample_alpha . similarityMat . similarityMatC . similarityMat_nocostC . summary.DPMMclust . traceEpsC . update_SS . update_SSsn . update_SSst . vclust2mcoclustC . wishrnd . 
Some associated R codes: DPMGibbsN.R . DPMGibbsN_SeqPrior.R . DPMGibbsN_parallel.R . DPMGibbsSkewN.R . DPMGibbsSkewN_parallel.R . DPMGibbsSkewT.R . DPMGibbsSkewT_SeqPrior.R . DPMGibbsSkewT_SeqPrior_parallel.R . DPMGibbsSkewT_parallel.R . DPMpost.R . Flimited.R . MAP_sNiW_mmEM.R . MLE_gamma.R . MLE_sNiW.R . MLE_sNiW_mmEM.R . NPflow-internal.R . NPflow-package.R . RcppExports.R . SliceSampler_SkewN.R . SliceSampler_SkewN_parallel.R . burn.DPMM.R . cluster_est_Fmeasure.R . cluster_est_Mbinder_norm.R . cluster_est_binder.R . cluster_est_pear.R . cytoScatter.R . dNNiW.R . dNiW.R . evalClustLoss.R . invwishrnd.R . logposterior_DPMG.R . logposterior_DPMSN.R . logposterior_DPMST.R . mmNiWpdf.R . mmsNiWlogpdf.R . mvnpdf.R . mvsnpdf.R . mvstpdf.R . mvtpdf.R . plot_ConvDPM.R . plot_DPM.R . plot_DPMsn.R . plot_DPMst.R . postProcess.DPMMclust.R . pred.R . priormix.R . rCRP.R . rNNiW.R . rNiW.R . sample_alpha.R . sample_scale.R . similarityMat.R . sliceSampler_N.R . sliceSampler_N_SeqPrior.R . sliceSampler_N_parallel.R . sliceSampler_skewT.R . sliceSampler_skewT_SeqPrior.R . sliceSampler_skewT_SeqPrior_parallel.R . sliceSampler_skewT_parallel.R . summary.DPMMclust.R . update_SS.R . update_SSsn.R . update_SSst.R . wishrnd.R .  Full NPflow package functions and examples
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