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RPPanalyzer  

Reads, Annotates, and Normalizes Reverse Phase Protein Array Data
View on CRAN: Click here


Download and install RPPanalyzer package within the R console
Install from CRAN:
install.packages("RPPanalyzer")

Install from Github:
library("remotes")
install_github("cran/RPPanalyzer")

Install by package version:
library("remotes")
install_version("RPPanalyzer", "1.4.9")



Attach the package and use:
library("RPPanalyzer")
Maintained by
Torsten Schoeps
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2010-01-18
Latest Update: 2023-08-28
Description:
Reads in sample description and slide description files and annotates the expression values taken from GenePix results files (text file format used by many microarray scanner and software providers). After normalization data can be visualized as boxplot, heatmap or dotplot.
How to cite:
Torsten Schoeps (2010). RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data. R package version 1.4.9, https://cran.r-project.org/web/packages/RPPanalyzer. Accessed 03 Dec. 2024.
Previous versions and publish date:
1.0.2 (2010-01-22 14:16), 1.0.3 (2010-05-28 18:46), 1.0.4 (2011-08-02 18:08), 1.0.5 (2012-10-03 12:16), 1.0 (2010-01-18 17:01), 1.2.2 (2014-01-21 16:35), 1.3 (2014-06-29 10:56), 1.4.1 (2015-06-25 01:06), 1.4.3 (2016-02-11 16:43), 1.4.4 (2017-06-26 15:56), 1.4.5 (2018-01-15 15:41), 1.4.6 (2020-07-15 16:10), 1.4.7 (2020-12-17 11:10), 1.4.8 (2023-08-28 14:30), 1.4 (2014-11-05 01:22)
Other packages that cited RPPanalyzer R package
View RPPanalyzer citation profile
Other R packages that RPPanalyzer depends, imports, suggests or enhances
Complete documentation for RPPanalyzer
Functions, R codes and Examples using the RPPanalyzer R package
Some associated functions: HKdata . S1.gpr . averageData . calcLinear . calcLogistic . calcSdc . correctBG . correctDilinterc . curvePredictSigmoid . dataI . dataII . dataIII . dataPreproc . getErrorModel . logList . normalizeRPPA . pick.high.conc . plotMeasurementsQC . plotQC . plotTimeCourse . plotTimeCourseII . plotqq . read.Data . remove.arrays . rppa2boxplot . rppaList2ExpressionSet . rppaList2Heatmap . rppanalyzer-package . sample.median . sampledescription.old . sampledescription.txt . select.measurements . select.sample.group . ser.dil.samples . simpleBoxplot . slidedescription.old . slidedescription.txt . test.correlation . write.Data . 
Some associated R codes: Sips.R . annotate.arrays.R . annotate.samples.R . array.id.R . averageData.R . calcLinear.R . calcLogistic.R . calcSdc.R . correctBG.R . correctDilinterc.R . create.ID.col.R . createColumnIndices.R . curveFitLinear.R . curveFitSigmoid.R . curvePredictLinear.R . curvePredictSigmoid.R . dataPreproc.R . dil.ser.id.R . g.link.R . get.Splines.R . getErrorModel.R . heatmapcolors.R . logList.R . median.raw.R . norm.BCA.R . norm.static.I.R . norm.static.II.R . norm.texas.R . normalizeRPPA.R . pick.high.conc.R . plotDilutionSeries.R . plotHeatmap.R . plotMeasurementsQC.R . plotQC.R . plotTimeCourse.R . plotTimeCourseII.R . plotqq.R . protein.con.R . read.Data.R . read.gpr.R . read.sampledescription.R . read.slidedescription.R . remove.arrays.R . rppa2boxplot.R . rppaList2ExpressionSet.R . rppaList2Heatmap.R . sample.median.R . samples.id.R . select.measurements.R . select.sample.group.R . simpleBoxplot.R . slides.id.R . spotbyspot.R . sub.ID.R . test.correlation.R . write.Data.R .  Full RPPanalyzer package functions and examples
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