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R0
View on CRAN: Click
here
Download and install R0 package within the R console
Install from CRAN:
install.packages("R0")
Install from Github:
library("remotes")
install_github("cran/R0")
Install by package version:
library("remotes")
install_version("R0", "1.3-1")
Attach the package and use:
library("R0")
Maintained by
Thomas Obadia
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-07-27
Latest Update: 2022-09-05
Description:
Estimation of reproduction numbers for disease outbreak, based on
incidence data. The R0 package implements several documented methods. It is
therefore possible to compare estimations according to the methods used.
Depending on the methods requested by user, basic reproduction number
(commonly denoted as R0) or real-time reproduction number (referred to as
R(t)) is computed, along with a 95% Confidence Interval. Plotting outputs
will give different graphs depending on the methods requested : basic
reproductive number estimations will only show the epidemic curve
(collected data) and an adjusted model, whereas real-time methods will also
show the R(t) variations throughout the outbreak time period. Sensitivity
analysis tools are also provided, and allow for investigating effects of
varying Generation Time distribution or time window on estimates.
How to cite:
Thomas Obadia (2012). R0: Estimation of R0 and Real-Time Reproduction Number from Epidemics. R package version 1.3-1, https://cran.r-project.org/web/packages/R0. Accessed 21 Dec. 2024.
Previous versions and publish date:
Other packages that cited R0 R package
View R0 citation profile
Other R packages that R0 depends,
imports, suggests or enhances
Complete documentation for R0
Functions, R codes and Examples using
the R0 R package
Some associated functions: GT.chld.hsld . Germany.1918 . H1N1.serial.interval . R.from.r . R0-package . censored.deviation . check.incid . est.GT . est.R0.AR . est.R0.EG . est.R0.ML . est.R0.SB . est.R0.TD . estimate.R . fit.epid . fit.epid.optim . generation.time . get.scale . impute.incid . inspect.data . integrity.checks . plot.R0.GT . plot.R0.R . plot.R0.S . plot.R0.sR . plotRAR . plotREG . plotRML . plotRSB . plotRTD . plotfit.R0.R . plotfit.R0.sR . plotfit . plotfitRAR . plotfitRSB . plotfitRxx . print.R0.GT . print.R0.R . print.R0.sR . sa.GT . sa.time . sensitivity.analysis . sim.epid.indiv . sim.epid . smooth.Rt .
Some associated R codes: R.from.r.R . censored.deviation.R . check.incid.R . est.GT.R . est.R0.AR.R . est.R0.EG.R . est.R0.ML.R . est.R0.SB.R . est.R0.TD.R . estimate.R.R . fit.epid.R . generation.time.R . impute.incid.R . inspect.data.R . integrity.checks.R . plot.R0.GT.R . plot.R0.R.R . plot.R0.S.R . plot.R0.sR.R . plotfit.R . plotfit.R0.R.R . plotfit.R0.sR.R . print.R0.GT.R . print.R0.R.R . print.R0.sR.R . sa.GT.R . sa.time.R . sensitivity.analysis.R . sim.epid.R . sim.epid.indiv.R . smooth.Rt.R . Full R0 package functions and examples
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