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PEIMAN2
View on CRAN: Click
here
Download and install PEIMAN2 package within the R console
Install from CRAN:
install.packages("PEIMAN2")
Install from Github:
library("remotes")
install_github("cran/PEIMAN2")
Install by package version:
library("remotes")
install_version("PEIMAN2", "0.1.0")
Attach the package and use:
library("PEIMAN2")
Maintained by
Payman Nickchi
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-21
Latest Update: 2022-11-21
Description:
Functions and mined database from 'UniProt' focusing on post-translational modifications to do single enrichment analysis (SEA) and protein set enrichment analysis (PSEA). Payman Nickchi, Mehdi Mirzaie, Marc Baumann, Amir Ata Saei, Mohieddin Jafari (2022) .
How to cite:
Payman Nickchi (2022). PEIMAN2: Post-Translational Modification Enrichment, Integration, and Matching Analysis. R package version 0.1.0, https://cran.r-project.org/web/packages/PEIMAN2. Accessed 05 Jan. 2025.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for PEIMAN2
Functions, R codes and Examples using
the PEIMAN2 R package
Some associated functions: PEIMAN2-package . exmplData1 . exmplData2 . getTaxonomyName . mod_ont . plotEnrichment . plotPSEA . plotRunningScore . psea2mass . ptmlist . runEnrichment . runPSEA . sea2mass .
Some associated R codes: PEIMAN-package.R . calculateES.R . compat-purrr.R . data.R . globals.R . peiman.R . plotEnrichment.R . plotPSEA.R . plotRunningScore.R . psea.R . psea2mass.R . runEnrichment.R . runPSEA.R . sea2mass.R . test.R . utility.R . Full PEIMAN2 package functions and examples
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